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[182385_at]

Description Y11D7A.1 /REP_DB=WormBase Gene ID /WP=CE19027 /TR=Q9XWQ9 /GB=CAA21589.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 6.8
(-3)
A 		11
(-2.4)
A 		25.9
(-0.3)
A 		49.8
(3)
A 		43
B 3.8
(-2.5)
A 		6.3
(-1.7)
A 		2.1
(-3)
A 		22
(3)
A 		20
C 6
(0.1)
A 		7.2
(1.1)
A 		2.1
(-3)
A 		9.6
(3)
A 		8
avr 5.5
(-3) 		8.2
(-2.3) 		10
(-1.8) 		27.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 34.3
(2)
A 		11.6
(-2.4)
A 		8.7
(-3)
A 		39.4
(3)
A 		17.1
(-1.4)
A 		24
(-0)
A 		31
B 13.8
(-1.5)
A 		4.9
(-3)
A 		12.7
(-1.7)
A 		5.5
(-2.9)
A 		7
(-2.6)
A 		40.6
(3)
A 		36
C 3.2
(-3)
A 		23.6
(-0.1)
A 		45.7
(3)
A 		15.5
(-1.3)
A 		7
(-2.5)
A 		30.1
(0.8)
A 		43
avr 17.1
(-1.1) 		13.4
(-2.2) 		22.4
(0.4) 		20.1
(-0.3) 		10.4
(-3) 		31.6
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.5
(-2.9)
A 		2.4
(-3)
A 		6.8
(2.4)
A 		7.3
(3)
A 		5
B 1.2
(-2)
A 		1.5
(-1.6)
A 		0.5
(-3)
A 		4.7
(3)
A 		4
C 2
(2.6)
A 		2.1
(3)
A 		0.7
(-3)
A 		1.6
(0.9)
A 		1
avr 1.9
(-3) 		2
(-2.8) 		2.7
(-1.2) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.3
(0.3)
A 		4.1
(-1.4)
A 		1.9
(-3)
A 		10
(3)
A 		5.2
(-0.6)
A 		5.9
(-0)
A 		8
B 4.8
(-1.5)
A 		1.6
(-2.9)
A 		3.1
(-2.3)
A 		1.4
(-3)
A 		2.9
(-2.3)
A 		15.1
(3)
A 		14
C 1.2
(-3)
A 		7.2
(0.5)
A 		11.6
(3)
A 		3.1
(-1.9)
A 		2.3
(-2.4)
A 		10.1
(2.1)
A 		10
avr 4.1
(-2.5) 		4.3
(-2.3) 		5.5
(-1.3) 		4.8
(-1.9) 		3.5
(-3) 		10.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8851
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.1 NCBI
Target Description Y11D7A.1 /REP_DB=WormBase Gene ID /WP=CE19027 /TR=Q9XWQ9 /GB=CAA21589.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069206 NCBI Caenorhabditis elegans Y11D7A.1 (Y11D7A.1) mRNA, complete cds. 11/11 None
Y11D7A.1 ENSEMBL cdna:known chromosome:CEL140:IV:9230342:9231098:-1 gene:Y11D7A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011199 8/11 Cross Hyb Matching Probes None
GENEFINDER00000011224 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9230347-9231104(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.1
Entrez Gene 189427 Entrez gene
SwissProt Q9XWQ9 EMBL-EBI
WormBase CE19027 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21589 Hypothetical protein Y11D7A.1 [Caenorhabditis elegans] ref|NP_501607.1| Y11D7A.1 [Caenorhabditis elegans] 9.0E-85
blast CAA87047 Hypothetical protein ZK1320.9 [Caenorhabditis elegans] ref|NP_496090.1| ZK1320.9 [Caenorhabditis elegans] 8.0E-62
blast CAE57991 Hypothetical protein CBG01054 [Caenorhabditis briggsae] 1.0E-58
Sequence
Target Sequence 
>C. ELEGANS:182385_AT
aaaacatccctaaaatccagatcatttcagattctgatgaattatgcgtctgctccaaat
gttcttctcgaagcatttcgtggtcgtgttgattcggcgaatctcaacagaaaaattcaa
aacaacagcctgttcatttgtccgggaaatcgtaaaaatgttaaattgggggccgccgac
tacactccgatcttcctctctgaagttccctctgtatacacaagtggaactctgaatgtt
cattttgcactgattactgtctcgccacctgatgagcttggattctgtacacttggagtc
gacattgacacgacactggcagcagcgactagtgccaaaaagattattgccctcgccaac
agcacaatgccccgtagtcgcggtcacactactgtccattcttctcatttcgctgcaatg
gttcaaacggatcgaccaatcgctttcgtcagtctggaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACATCCCTAAAATCCAGATCAT 79 131 46 Antisense
AAATCCAGATCATTTCAGATTCTGA 26 119 58 Antisense
TTCTGATGAATTATGCGTCTGCTCC 509 693 77 Antisense
AATTATGCGTCTGCTCCAAATGTTC 137 175 85 Antisense
GTTCTTCTCGAAGCATTTCGTGGTC 235 443 106 Antisense
GCATTTCGTGGTCGTGTTGATTCGG 113 307 118 Antisense
GATTCGGCGAATCTCAACAGAAAAA 141 433 136 Antisense
TCTCGCCACCTGATGAGCTTGGATT 1 611 305 Antisense
CATTGACACGACACTGGCAGCAGCG 152 217 348 Antisense
CAAAAAGATTATTGCCCTCGCCAAC 455 191 381 Antisense
AATCGCTTTCGTCAGTCTGGAGGAG 502 167 483 Antisense
Sequence Source Affymetrix Proprietary Database