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[182383_at]

Description Y59A8A.5 /REP_DB=WormBase Gene ID /WP=CE26203 /TR=Q9GRZ7 /GB=CAC14402.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 42      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 47.7
(-3)
A 		114.9
(3)
A 		68.3
(-1.2)
A 		51
(-2.7)
A 		67
B 7.3
(-3)
A 		43.2
(1.1)
A 		43.3
(1.1)
A 		60.2
(3)
A 		53
C 16.9
(-3)
A 		70.8
(3)
A 		44.9
(0.1)
A 		57
(1.5)
A 		54
avr 24
(-3) 		76.3
(3) 		52.2
(0.2) 		56.1
(0.7) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 7
(-2.9)
A 		41.8
(2.9)
A 		31.9
(1.2)
A 		42.6
(3)
A 		22
(-0.4)
A 		6.5
(-3)
A 		36
B 25.7
(0.3)
A 		43.9
(3)
A 		2.7
(-3)
A 		6.6
(-2.4)
A 		6.4
(-2.5)
A 		37.7
(2.1)
A 		41
C 24.8
(-1.5)
A 		38.5
(0.4)
A 		56.5
(3)
A 		14.2
(-3)
A 		15.9
(-2.8)
A 		35.9
(0.1)
A 		42
avr 19.2
(-2) 		41.4
(3) 		30.4
(0.5) 		21.1
(-1.6) 		14.8
(-3) 		26.7
(-0.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 17.4
(0.4)
A 		24.9
(3)
A 		17.9
(0.6)
A 		7.5
(-3)
A 		17
B 2.3
(-3)
A 		10.7
(1.8)
A 		10
(1.4)
A 		12.8
(3)
A 		11
C 5.6
(-3)
A 		20.4
(3)
A 		15.6
(1.1)
A 		9.6
(-1.4)
A 		15
avr 8.4
(-3) 		18.7
(3) 		14.5
(0.6) 		10
(-2.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.3
(-3)
A 		14.9
(3)
A 		6.9
(-0.5)
A 		10.8
(1.2)
A 		6.6
(-0.7)
A 		1.6
(-2.9)
A 		14
B 8.9
(0.6)
A 		14.6
(3)
A 		0.6
(-3)
A 		1.8
(-2.5)
A 		2.6
(-2.1)
A 		14
(2.7)
A 		14
C 9.2
(0.3)
A 		11.7
(1.6)
A 		14.4
(3)
A 		2.9
(-3)
A 		5.1
(-1.9)
A 		12
(1.7)
A 		12
avr 6.5
(-1.9) 		13.7
(3) 		7.3
(-1.3) 		5.2
(-2.7) 		4.8
(-3) 		9.2
(-0) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14193
Sequence Type Exemplar sequence
Representative Public ID Y59A8A.5 NCBI
Target Description Y59A8A.5 /REP_DB=WormBase Gene ID /WP=CE26203 /TR=Q9GRZ7 /GB=CAC14402.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001051 ENSEMBL cdna:SNAP chromosome:CEL140:V:17839084:17843515:-1 11/11 None
Y59A8A.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17841407:17843764:-1 gene:Y59A8A.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17841406-17843764(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y59A8A.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC15864 Hypothetical protein Y94A7B.9 [Caenorhabditis elegans] ref|NP_507501.1| Serpentine Receptor, class H family member (srh-304) [Caenorhabditis elegans] 1.0E-38
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 3.0E-37
blast CAA19562 Hypothetical protein Y94A7B.6 [Caenorhabditis elegans] ref|NP_507499.1| Serpentine Receptor, class H family member (srh-300) [Caenorhabditis elegans] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.9E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001051 3 12-31,51-73,129-151
Sequence
Target Sequence 
>C. ELEGANS:182383_AT
gtcgttggtgccacacttatttataaaattgtaccggtctccataatctccatgtttgaa
aatcgtttctttgtattattcgtcaatggaagttcctggcgatatcttcgctacccattt
ctagcattcaattacatatttgctatcgtctattgcacactactctatctagaagtacct
gttgatcaagagaaagccaagcgaattatattcaattcgaatcctcaggcttgtgaaatt
atccctgataaatccaaagtattcgcaatggattctggatacaactattggacatctcta
cgggaaaatgctctcacatgctttgttttgatggaaattatagttctcgttgtattgtta
aggatagcacttccaattcttgtgatattcatcccagcaacagttggcgctgcgattgca
aaccagggtgttagcctacaatttgttgatattctattcaacattatcacatcacttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTTGGTGCCACACTTATTTATA 356 471 298 Antisense
ATAAAATTGTACCGGTCTCCATAAT 632 23 320 Antisense
CTTCGCTACCCATTTCTAGCATTCA 69 221 403 Antisense
TATCGTCTATTGCACACTACTCTAT 320 657 441 Antisense
ATTCAATTCGAATCCTCAGGCTTGT 137 13 507 Antisense
ACAACTATTGGACATCTCTACGGGA 550 111 578 Antisense
AGGATAGCACTTCCAATTCTTGTGA 15 57 658 Antisense
ATTCTTGTGATATTCATCCCAGCAA 671 11 673 Antisense
ATCCCAGCAACAGTTGGCGCTGCGA 648 37 688 Antisense
TGGCGCTGCGATTGCAAACCAGGGT 221 545 702 Antisense
ATTCAACATTATCACATCACTTCAT 628 11 753 Antisense
Sequence Source Affymetrix Proprietary Database