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[182382_at]

Description C26H9A.2 /REP_DB=WormBase Gene ID /WP=CE20526 /TR=Q9XTS7 /GB=CAB16307.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 90.9
(3)
A 		63.9
(0)
A 		36.6
(-3)
A 		71.1
(0.8)
A 		54
B 51.1
(3)
A 		45.9
(2.3)
A 		7.7
(-3)
A 		29
(-0.1)
A 		43
C 55.7
(-0.4)
A 		37.4
(-3)
A 		44.5
(-2)
A 		80.3
(3)
A 		43
avr 65.9
(3) 		49.1
(0.2) 		29.6
(-3) 		60.1
(2) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 14.3
(-1.3)
A 		12.5
(-1.6)
A 		28.7
(1)
A 		10.8
(-1.8)
A 		41.7
(3)
A 		3.4
(-3)
A 		38
B 31.3
(3)
A 		29.2
(2.4)
A 		21.2
(0.2)
A 		9.6
(-3)
A 		11.8
(-2.4)
A 		29
(2.4)
A 		22
C 33.8
(0.9)
A 		44
(2.4)
A 		48.4
(3)
A 		9.3
(-2.7)
A 		15.3
(-1.8)
A 		7.4
(-3)
A 		41
avr 26.5
(1.3) 		28.6
(1.9) 		32.8
(3) 		9.9
(-3) 		22.9
(0.4) 		13.3
(-2.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 33.1
(3)
A 		13.9
(-1.9)
A 		9.6
(-3)
A 		10.4
(-2.8)
A 		24
B 16.3
(3)
A 		11.3
(0.9)
A 		1.8
(-3)
A 		6.2
(-1.2)
A 		15
C 18.4
(3)
A 		10.8
(-3)
A 		15.5
(0.7)
A 		13.5
(-0.9)
A 		8
avr 22.6
(3) 		12
(-1.7) 		9
(-3) 		10
(-2.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.6
(-2.1)
A 		4.5
(-1.1)
A 		6.3
(-0.2)
A 		2.8
(-2)
A 		12.6
(3)
A 		0.8
(-3)
A 		12
B 10.9
(3)
A 		9.7
(2.1)
A 		5.2
(-1.1)
A 		2.5
(-3)
A 		4.8
(-1.4)
A 		10.8
(2.9)
A 		8
C 12.5
(2.5)
A 		13.4
(3)
A 		12.3
(2.4)
A 		1.9
(-3)
A 		4.9
(-1.4)
A 		2.5
(-2.7)
A 		12
avr 8.7
(2.6) 		9.2
(3) 		7.9
(1.9) 		2.4
(-3) 		7.4
(1.4) 		4.7
(-1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8805
Sequence Type Exemplar sequence
Representative Public ID C26H9A.2 NCBI
Target Description C26H9A.2 /REP_DB=WormBase Gene ID /WP=CE20526 /TR=Q9XTS7 /GB=CAB16307.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070019 NCBI Caenorhabditis elegans C26H9A.2 (C26H9A.2) mRNA, complete cds. 11/11 None
C26H9A.2 ENSEMBL cdna:known chromosome:CEL140:IV:12653460:12662094:1 gene:C26H9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12653465-12662100(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26H9A.2
Entrez Gene 178220 Entrez gene
SwissProt Q9XTS7 EMBL-EBI
WormBase CE20526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16307 Hypothetical protein C26H9A.2 [Caenorhabditis elegans] ref|NP_502420.1| C26H9A.2 [Caenorhabditis elegans] 0.0
blast AAF52302 CG14001-PA [Drosophila melanogaster] ref|NP_608968.2| CG14001-PA [Drosophila melanogaster] 0.0
blast XP_788991 PREDICTED: similar to WD repeat and FYVE domain containing 3 isoform 1 [Strongylocentrotus purpuratus] 1.0E-178
Sequence
Target Sequence 
>C. ELEGANS:182382_AT
ggctgtagtgttcaatcgatccgtattgaaatcatcacaggtatcactctacttgaacgg
ccgtcacatttcaacgcaaaagctgatgtatgtagcacaaaatgctggaggagcagccac
tcagctggcacaaacatactcggtgaatgcagttgttggcacattgccagctctcagaag
gcctagcaggttaagattccgcctggcttcgatattcctcgccgaagagccaatgactgc
ggaaacagttcgagctgttgtacagcttcaacctcattatattggaaattatcaaactgc
cagtacagctccactattccacgaggaaaagatagtcttctcactgtcagcagctgctac
acaggaattaacgcttgcaaagattcgaacaatgtatgggaaaatggatgcagaaattct
ttcacagcatcttggaatatcaccaaatgatcacagtactccacttcgtgtactctgtaa
cacaatatctcatgctcctggagcaggtcgtacattcggtggagttattgttggatacct
tggaatgcgaacgtttacacctcgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGTAGTGTTCAATCGATCCGTA 441 539 3399 Antisense
CAGGTATCACTCTACTTGAACGGCC 627 205 3436 Antisense
CTCAGCTGGCACAAACATACTCGGT 367 229 3518 Antisense
TTGCCAGCTCTCAGAAGGCCTAGCA 194 701 3562 Antisense
AAGATTCCGCCTGGCTTCGATATTC 64 157 3591 Antisense
GATATTCCTCGCCGAAGAGCCAATG 434 427 3609 Antisense
AAAGATAGTCTTCTCACTGTCAGCA 28 123 3726 Antisense
TACTCCACTTCGTGTACTCTGTAAC 244 645 3855 Antisense
GTAACACAATATCTCATGCTCCTGG 46 463 3875 Antisense
GGAGCAGGTCGTACATTCGGTGGAG 208 521 3898 Antisense
GAATGCGAACGTTTACACCTCGACC 428 331 3941 Antisense
Sequence Source Affymetrix Proprietary Database