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[182381_at]

Description F07H5.12 /REP_DB=WormBase Gene ID /WP=CE03161 /TR=Q19179 /GB=CAA92660.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 11.6
(-3)
A 		38.3
(-0.1)
A 		66.1
(3)
A 		19.7
(-2.1)
A 		55
B 13.6
(-1.2)
A 		11.1
(-3)
A 		12.9
(-1.7)
A 		19.3
(3)
A 		8
C 9.6
(-3)
A 		62.4
(1.5)
A 		43.3
(-0.1)
A 		80.3
(3)
A 		71
avr 11.6
(-3) 		37.3
(2.3) 		40.8
(3) 		39.8
(2.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 58.1
(3)
A 		5.7
(-3)
A 		19.8
(-1.4)
A 		8.8
(-2.6)
A 		9.3
(-2.6)
A 		15.1
(-1.9)
A 		52
B 17.5
(-1.9)
A 		10.2
(-2.8)
A 		54.5
(3)
A 		16.1
(-2)
A 		8.8
(-3)
A 		33
(0.2)
A 		46
C 17.3
(-1.4)
A 		30.2
(1.1)
A 		8.7
(-3)
A 		40.3
(3)
A 		38.4
(2.6)
A 		17.7
(-1.3)
A 		32
avr 31
(3) 		15.4
(-3) 		27.7
(1.7) 		21.7
(-0.6) 		18.8
(-1.7) 		21.9
(-0.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.2
(-2.5)
A 		8.3
(-0.8)
A 		17.3
(3)
A 		2.9
(-3)
A 		14
B 4.4
(3)
A 		2.7
(-3)
A 		3
(-1.9)
A 		4.1
(1.9)
A 		2
C 3.2
(-3)
A 		17.9
(3)
A 		15.1
(1.9)
A 		13.5
(1.2)
A 		15
avr 3.9
(-3) 		9.6
(1.3) 		11.8
(3) 		6.8
(-0.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 10.7
(3)
A 		2
(-3)
A 		4.3
(-1.4)
A 		2.2
(-2.9)
A 		2.8
(-2.4)
A 		3.7
(-1.8)
A 		9
B 6.1
(-1.3)
A 		3.4
(-3)
A 		13.2
(3)
A 		4.3
(-2.4)
A 		3.6
(-2.9)
A 		12.3
(2.4)
A 		10
C 6.4
(-0.5)
A 		9.2
(1.1)
A 		2.2
(-3)
A 		8.1
(0.5)
A 		12.4
(3)
A 		5.9
(-0.8)
A 		10
avr 7.7
(3) 		4.9
(-3) 		6.6
(0.6) 		4.9
(-3) 		6.3
(-0) 		7.3
(2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3030
Sequence Type Exemplar sequence
Representative Public ID F07H5.12 NCBI
Target Description F07H5.12 /REP_DB=WormBase Gene ID /WP=CE03161 /TR=Q19179 /GB=CAA92660.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063472 NCBI Caenorhabditis elegans F07H5.12 (F07H5.12) mRNA, complete cds. 11/11 None
F07H5.12 ENSEMBL cdna:known chromosome:CEL140:II:8799862:8801011:1 gene:F07H5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8799858-8801008(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07H5.12
Entrez Gene 184166 Entrez gene
SwissProt Q19179 EMBL-EBI
WormBase CE03161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92660 Hypothetical protein F07H5.12 [Caenorhabditis elegans] ref|NP_495873.1| F07H5.12 [Caenorhabditis elegans] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:182381_AT
gcttctccgtgtctatcggcaatgcatcatcatcaccttcccgttttgtttcacatttaa
tcctcccacatgctccactgccagtcaaaaatcagaagaaggcaccactggccgtgtcaa
ggatccaccaaaaatccaaaatctagtcgtcaatttccgtcggtcctcggacgacgatcc
gatgcaaaaagttgatccgtttttttgcgtctcctccattcttcgtcttcttcctgtaaa
ttccttcctggtgcatcgagacggaaaggaggagcatcctacaattttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCTCCGTGTCTATCGGCAATGC 336 305 39 Antisense
TGTCTATCGGCAATGCATCATCATC 217 557 48 Antisense
TTTTGTTTCACATTTAATCCTCCCA 559 677 82 Antisense
ACATGCTCCACTGCCAGTCAAAAAT 365 107 106 Antisense
AGAAGAAGGCACCACTGGCCGTGTC 321 73 132 Antisense
TGGCCGTGTCAAGGATCCACCAAAA 254 545 147 Antisense
GTCCTCGGACGACGATCCGATGCAA 498 475 201 Antisense
ATCCGATGCAAAAAGTTGATCCGTT 78 39 215 Antisense
TTCTTCCTGTAAATTCCTTCCTGGT 676 689 266 Antisense
TTCCTTCCTGGTGCATCGAGACGGA 642 699 279 Antisense
GGAGGAGCATCCTACAATTTTTTGC 575 515 306 Antisense
Sequence Source Affymetrix Proprietary Database