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[182380_at]

Description F55A4.4 /REP_DB=WormBase Gene ID /WP=CE11105 /TR=Q94238 /GB=AAB07562.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 140.8
(0.3)
P 		36.4
(-2.3)
A 		6.9
(-3)
A 		250.7
(3)
P 		244
B 132.4
(0.2)
P 		70.6
(-1.3)
A 		4.1
(-3)
A 		245.9
(3)
P 		242
C 166.2
(0.9)
P 		41.6
(-2.2)
A 		7.4
(-3)
A 		254.7
(3)
P 		247
avr 146.5
(0.4) 		49.5
(-1.9) 		6.1
(-3) 		250.4
(3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 95.7
(2.9)
A 		56.5
(-0.9)
A 		60.8
(-0.5)
A 		35
(-3)
A 		35.1
(-3)
A 		96.4
(3)
P 		61
B 54.3
(-1.9)
A 		47.3
(-2.3)
A 		40.9
(-2.8)
A 		37.6
(-3)
A 		50.3
(-2.1)
A 		126.4
(3)
P 		89
C 54
(-0.4)
A 		41.3
(-1.1)
A 		8.6
(-3)
A 		37.5
(-1.3)
A 		8.2
(-3)
A 		112.1
(3)
P 		104
avr 68
(-0.3) 		48.4
(-1.7) 		36.8
(-2.6) 		36.7
(-2.6) 		31.2
(-3) 		111.6
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 51.3
(3)
P 		7.9
(-2.3)
A 		1.8
(-3)
A 		36.7
(1.2)
P 		50
B 42.2
(1.8)
P 		17.4
(-1.1)
A 		1
(-3)
A 		52.4
(3)
P 		51
C 55
(3)
P 		12
(-1.9)
A 		2.6
(-3)
A 		42.9
(1.6)
P 		52
avr 49.5
(3) 		12.4
(-1.7) 		1.8
(-3) 		44
(2.3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 17.6
(0.6)
A 		20.1
(1.6)
A 		13.2
(-1.2)
A 		8.9
(-3)
A 		10.6
(-2.3)
A 		23.5
(3)
P 		15
B 18.9
(-1.5)
A 		15.7
(-2.1)
A 		9.9
(-3)
A 		10
(-3)
A 		20.4
(-1.3)
A 		47.1
(3)
P 		37
C 20
(0)
A 		12.6
(-1.2)
A 		2.2
(-3)
A 		7.5
(-2.1)
A 		2.6
(-2.9)
A 		37.5
(3)
P 		35
avr 18.8
(-0.7) 		16.1
(-1.3) 		8.4
(-3) 		8.8
(-2.9) 		11.2
(-2.4) 		36
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18278
Sequence Type Exemplar sequence
Representative Public ID F55A4.4 NCBI
Target Description F55A4.4 /REP_DB=WormBase Gene ID /WP=CE11105 /TR=Q94238 /GB=AAB07562.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075794 NCBI Caenorhabditis elegans F55A4.4 (F55A4.4) mRNA, complete cds. 11/11 None
SNAP00000039511 ENSEMBL cdna:SNAP chromosome:CEL140:X:1024643:1026881:-1 11/11 None
GENEFINDER00000039520 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1024643:1027543:-1 11/11 None
F55A4.4 ENSEMBL cdna:known chromosome:CEL140:X:1024643:1026389:-1 gene:F55A4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1024642-1026389(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A4.4
Entrez Gene 186274 Entrez gene
SwissProt Q94238 EMBL-EBI
WormBase CE11105 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3725 double-stranded RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB07562 Hypothetical protein F55A4.4 [Caenorhabditis elegans] ref|NP_508195.1| F55A4.4 [Caenorhabditis elegans] 1.0E-137
blast AAB07562 Hypothetical protein F55A4.4 [Caenorhabditis elegans] ref|NP_508195.1| F55A4.4 [Caenorhabditis elegans] 1.0E-136
blast AAB07562 Hypothetical protein F55A4.4 [Caenorhabditis elegans] ref|NP_508195.1| F55A4.4 [Caenorhabditis elegans] 1.0E-135
blast AAB07566 Hypothetical protein F55A4.5 [Caenorhabditis elegans] ref|NP_508196.1| F55A4.5 [Caenorhabditis elegans] 2.0E-51
blast AAB07566 Hypothetical protein F55A4.5 [Caenorhabditis elegans] ref|NP_508196.1| F55A4.5 [Caenorhabditis elegans] 3.0E-51
blast AAB70372 Hypothetical protein F39E9.7 [Caenorhabditis elegans] ref|NP_494501.1| F39E9.7 [Caenorhabditis elegans] 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 2.7E-15
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 9.1E-17
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 2.7E-15
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 9.1E-17
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 2.7E-15
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 9.1E-17
Sequence
Target Sequence 
>C. ELEGANS:182380_AT
ggtatactctggtggcggacgataatgtggtgaaggcaaaagcgatgggcaagggcaaaa
ataagaagagtgctcagcaggaagcatgcacacagcttttggctacggttgagcatctta
cccttgctgccaatgtgcgcaaaaccgaaaagaatcaggccacaatgaaaaaagatgagg
agattgatgtcctaaacccagtggctcaattaaatgaatatgcacaaaaattttataaga
agtatccgactttcgagtttgtcaaagaacaagccgtgggcaagcacagagaatttgtta
tccaagcaacatttgaaaacaaaactctggaagggagaggtccaagtaaaataatatcaa
aaagagcagctgccgaagcaattctcgagtcgattggattcataaaaccatcgctaagca
agcccgacacatctgaagcagcacacctatcaccggagcaaacggataccaatgaaaaga
gaacgctttcaccggatacaaaagaactgacggtcactttcaactcaacggagctaacgg
atatcaatgagaagcaaaaagttcaaatggaaaaagtgcatgcttgtctatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTATACTCTGGTGGCGGACGATAA 559 503 200 Antisense
TGGCTACGGTTGAGCATCTTACCCT 97 545 299 Antisense
TTGATGTCCTAAACCCAGTGGCTCA 672 675 383 Antisense
AAAACCATCGCTAAGCAAGCCCGAC 522 131 603 Antisense
TAAGCAAGCCCGACACATCTGAAGC 392 635 614 Antisense
ACATCTGAAGCAGCACACCTATCAC 194 107 628 Antisense
GCACACCTATCACCGGAGCAAACGG 454 317 640 Antisense
AAAGAGAACGCTTTCACCGGATACA 518 121 675 Antisense
AAGAACTGACGGTCACTTTCAACTC 88 153 701 Antisense
GGTCACTTTCAACTCAACGGAGCTA 578 503 711 Antisense
GGAAAAAGTGCATGCTTGTCTATCC 587 525 768 Antisense
Sequence Source Affymetrix Proprietary Database