[Home] | [Total List]

[182379_at]

Description D2013.10 /REP_DB=WormBase Gene ID /WP=CE17622 /TR=O62126 /GB=CAA87776.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 70      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 81      6grp_total > 90      4grp_total > 25      6grp_cgc > 96      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 275
(-3)
P 		338.3
(-0.6)
P 		431.6
(3)
P 		387.8
(1.3)
P 		157
B 251.2
(-3)
P 		431.1
(0.5)
P 		362.5
(-0.8)
P 		556.2
(3)
P 		305
C 333.3
(-3)
P 		385.8
(-1.3)
P 		358
(-2.2)
P 		521.2
(3)
P 		188
avr 286.5
(-3) 		385.1
(-0.1) 		384
(-0.1) 		488.4
(3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 244.8
(-2.5)
P 		237
(-3)
P 		321.1
(2.2)
P 		321.5
(2.2)
P 		333.8
(3)
P 		269
(-1)
P 		97
B 304.8
(-1.6)
P 		397.4
(3)
P 		277.7
(-3)
P 		350.8
(0.7)
P 		331.8
(-0.3)
P 		308.7
(-1.4)
P 		120
C 339.7
(3)
P 		333.1
(2.6)
P 		245.3
(-2.6)
P 		333.3
(2.6)
P 		239.3
(-3)
P 		292.6
(0.2)
P 		100
avr 296.4
(-1.3) 		322.5
(1.6) 		281.4
(-3) 		335.2
(3) 		301.6
(-0.7) 		290.1
(-2) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 100.1
(1.6)
P 		73.4
(-1.2)
P 		112.8
(3)
P 		56.8
(-3)
P 		56
B 80.1
(-3)
P 		106.5
(1.1)
P 		84
(-2.4)
P 		118.5
(3)
P 		38
C 110.3
(0.6)
P 		110.9
(0.7)
P 		124.8
(3)
P 		87.9
(-3)
P 		37
avr 96.8
(-0.2) 		96.9
(-0.2) 		107.2
(3) 		87.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 45.1
(-3)
P 		84.3
(1.2)
P 		69.9
(-0.3)
P 		81.5
(0.9)
P 		100.7
(3)
P 		65.5
(-0.8)
P 		56
B 106.1
(0.4)
P 		132.3
(2.8)
P 		67.4
(-3)
P 		92.9
(-0.7)
P 		134.8
(3)
P 		115.1
(1.2)
P 		67
C 125.9
(3)
P 		101.7
(0.7)
P 		62.4
(-3)
P 		67
(-2.6)
P 		77.4
(-1.6)
P 		98
(0.4)
P 		64
avr 92.4
(0.9) 		106.1
(3) 		66.6
(-3) 		80.5
(-0.9) 		104.3
(2.7) 		92.9
(1) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3783
Sequence Type Exemplar sequence
Representative Public ID D2013.10 NCBI
Target Description D2013.10 /REP_DB=WormBase Gene ID /WP=CE17622 /TR=O62126 /GB=CAA87776.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063584 NCBI Caenorhabditis elegans D2013.10 (D2013.10) mRNA, complete cds. 11/11 None
SNAP00000019825 ENSEMBL cdna:SNAP chromosome:CEL140:II:9323872:9324612:1 11/11 None
GENEFINDER00000019836 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9323872:9324612:1 11/11 None
D2013.10 ENSEMBL cdna:known chromosome:CEL140:II:9323872:9324612:1 gene:D2013.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9323868-9324609(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2013.10
Entrez Gene 183942 Entrez gene
SwissProt O62126 EMBL-EBI
WormBase CE17622 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12006_AT expressed protein at
ATH1-121501:245361_AT expressed protein at
CANINE:1596435_AT similar to transmembrane protein 41B cfa
CANINE_2:CFA.15207.1.S1_S_AT similar to transmembrane protein 41B cfa
CANINE_2:CFA.15207.2.S1_S_AT similar to transmembrane protein 41B cfa
CANINE_2:CFA.1749.1.A1_AT similar to transmembrane protein 41B cfa
DROSOPHILA_2:1634053_AT dm
DROSGENOME1:153755_AT dm
CHICKEN:GGA.13091.1.S1_AT transmembrane protein 41B gga
CHICKEN:GGAAFFX.12871.1.S1_S_AT transmembrane protein 41B gga
HU35KSUBC:RC_R81807_S_AT transmembrane protein 41B hs
HU35KSUBD:RC_AA420990_S_AT transmembrane protein 41B hs
HUGENEFL:D26067_AT transmembrane protein 41B hs
U133_X3P:HS.174905.0.S2_3P_AT transmembrane protein 41B hs
U133_X3P:HS.174905.0.S1_3P_AT transmembrane protein 41B hs
HG-U133A_2:212622_AT transmembrane protein 41B hs
HG-U133_PLUS_2:212622_AT transmembrane protein 41B hs
HG-U133A:212622_AT transmembrane protein 41B hs
HG-U133A_2:212623_AT transmembrane protein 41B hs
HG-U133_PLUS_2:212623_AT transmembrane protein 41B hs
HG-U133A:212623_AT transmembrane protein 41B hs
HG-U95AV2:41129_AT transmembrane protein 41B hs
HG-U95C:63906_F_AT transmembrane protein 41B hs
HU35KSUBB:RC_AA193223_AT Transmembrane protein 41B hs
MOUSE430_2:1438790_X_AT transmembrane protein 41B mm
MOE430A:1438790_X_AT transmembrane protein 41B mm
MOUSE430A_2:1438790_X_AT transmembrane protein 41B mm
MU11KSUBA:AA544751_G_AT transmembrane protein 41B mm
MU11KSUBA:AA544751_AT transmembrane protein 41B mm
MU11KSUBA:R75485_RC_AT transmembrane protein 41B mm
MG-U74AV2:99619_AT transmembrane protein 41B mm
MG-U74CV2:129019_AT transmembrane protein 41B mm
MG-U74AV2:161979_F_AT transmembrane protein 41B mm
MOE430A:1428586_AT transmembrane protein 41B mm
MOUSE430A_2:1428586_AT transmembrane protein 41B mm
MOUSE430_2:1428586_AT transmembrane protein 41B mm
MOE430A:1428587_AT transmembrane protein 41B mm
MOUSE430A_2:1428587_AT transmembrane protein 41B mm
MOUSE430_2:1428587_AT transmembrane protein 41B mm
MOE430A:1438117_X_AT transmembrane protein 41B mm
MOUSE430A_2:1438117_X_AT transmembrane protein 41B mm
MOUSE430_2:1438117_X_AT transmembrane protein 41B mm
MOE430A:1437402_X_AT transmembrane protein 41B mm
MOUSE430A_2:1437402_X_AT transmembrane protein 41B mm
MOUSE430_2:1437402_X_AT transmembrane protein 41B mm
MOE430B:1460122_AT transmembrane protein 41B mm
MOUSE430_2:1460122_AT transmembrane protein 41B mm
MG-U74CV2:134060_AT Transmembrane protein 41B (Tmem41b), mRNA mm
MU19KSUBA:TC16634_AT Transmembrane protein 41B (Tmem41b), mRNA mm
MU19KSUBA:TC17881_AT Transmembrane protein 41B (Tmem41b), mRNA mm
RAE230B:1382689_AT similar to RGD1310870_predicted protein rn
RAT230_2:1382689_AT similar to RGD1310870_predicted protein rn
Protein Similarities
Method ID Description E-Value
blast CAA87776 Hypothetical protein D2013.10 [Caenorhabditis elegans] ref|NP_495985.1| D2013.10 [Caenorhabditis elegans] 1.0E-138
blast CAE72911 Hypothetical protein CBG20229 [Caenorhabditis briggsae] 1.0E-104
blast XP_392926 PREDICTED: similar to ENSANGP00000017454 [Apis mellifera] 9.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495985.1 5 10-32,67-86,101-123,170-192,217-239
D2013.10 5 10-32,67-86,101-123,170-192,217-239
SNAP00000019825 5 10-32,67-86,101-123,170-192,217-239
GENEFINDER00000019836 5 10-32,67-86,101-123,170-192,217-239
Sequence
Target Sequence 
>C. ELEGANS:182379_AT
taagcagctgggcagagttctctcgaagtacaaggagaacaactattcagtagttctgtg
cggtgtaattgtcgtctacgtatttctacagtccttcgctatccctggatctatttttct
aacaattctatcaggatacctgtttccattctatgtggcaattgtgttggtgtgctcctg
ctctgcaactggagccgccatctgctacaccatttctaaactttttggacgatcatttgt
tttgcaaaagtttcccgaaagaatcgcaaaatggcaggatgatctgagcaagcatcgtga
tgactttctgaactatatgattttccttcgagtaactccaattgttccaaattggctaat
caacattgccagtcctgttctagatgttccactggctccattcttctggggaacatttct
aggcgttgctccaccaagtttcctgtatattcaagctggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCAGCTGGGCAGAGTTCTCTCG 642 637 168 Antisense
GTCGTCTACGTATTTCTACAGTCCT 426 473 238 Antisense
CTATCCCTGGATCTATTTTTCTAAC 174 225 266 Antisense
TCAGGATACCTGTTTCCATTCTATG 251 623 298 Antisense
GCAATTGTGTTGGTGTGCTCCTGCT 515 323 325 Antisense
TGCTCCTGCTCTGCAACTGGAGCCG 35 583 340 Antisense
CATCTGCTACACCATTTCTAAACTT 296 213 366 Antisense
ATGATTTTCCTTCGAGTAACTCCAA 425 47 484 Antisense
TGCCAGTCCTGTTCTAGATGTTCCA 566 585 534 Antisense
TGGCTCCATTCTTCTGGGGAACATT 689 543 560 Antisense
GTTTCCTGTATATTCAAGCTGGCTC 501 451 605 Antisense
Sequence Source Affymetrix Proprietary Database