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[182378_s_at]

Description Y43F8C.5 /REP_DB=WormBase Gene ID /WP=CE21903 /TR=Q9XWP2 /GB=CAA21609.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 29      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 7.9
(-0.7)
A 		6.5
(-3)
A 		10.1
(3)
A 		10
(2.8)
A 		4
B 7.3
(1.4)
A 		6.3
(0.1)
A 		8.5
(3)
A 		3.9
(-3)
A 		5
C 39.4
(3)
A 		30.8
(1.5)
A 		5.7
(-3)
A 		35
(2.2)
A 		34
avr 18.2
(3) 		14.5
(0.8) 		8.1
(-3) 		16.3
(1.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 69.5
(-0.7)
A 		8.9
(-2.8)
A 		5.1
(-2.9)
A 		3.5
(-3)
A 		72.4
(-0.6)
A 		173.7
(3)
P 		170
B 19.5
(-2.4)
A 		2.6
(-3)
A 		2.4
(-3)
A 		18.8
(-2.4)
A 		92.6
(0.4)
A 		160.9
(3)
P 		159
C 6.3
(-2.9)
A 		8.2
(-2.8)
A 		4.6
(-3)
A 		68.4
(0.1)
A 		84.3
(0.9)
A 		127.6
(3)
P 		123
avr 31.8
(-1.9) 		6.6
(-2.9) 		4
(-3) 		30.2
(-2) 		83.1
(0.2) 		154.1
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.9
(3)
A 		1.4
(-3)
A 		2.6
(1.8)
A 		1.5
(-2.6)
A 		2
B 2.3
(3)
A 		1.6
(0.2)
A 		2
(1.8)
A 		0.8
(-3)
A 		2
C 13
(3)
A 		8.9
(0.8)
A 		2
(-3)
A 		5.9
(-0.9)
A 		11
avr 6.1
(3) 		4
(-0.2) 		2.2
(-3) 		2.7
(-2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 12.8
(-1.3)
A 		3.2
(-2.7)
A 		1.1
(-3)
A 		0.9
(-3)
A 		21.8
(0)
A 		42.3
(3)
P 		41
B 6.8
(-2.4)
A 		0.9
(-3)
A 		0.6
(-3)
A 		5
(-2.6)
A 		37.6
(0.7)
A 		60
(3)
P 		59
C 2.4
(-2.8)
A 		2.5
(-2.8)
A 		1.2
(-3)
A 		13.8
(-1.2)
A 		27.3
(0.8)
A 		42.7
(3)
P 		42
avr 7.3
(-2.2) 		2.2
(-2.8) 		1
(-3) 		6.6
(-2.3) 		28.9
(0.5) 		48.3
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182378_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13521
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.5 NCBI
Target Description Y43F8C.5 /REP_DB=WormBase Gene ID /WP=CE21903 /TR=Q9XWP2 /GB=CAA21609.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075404 NCBI Caenorhabditis elegans Y43F8C.5 (Y43F8C.5) mRNA, complete cds. 11/11 None
SNAP00000039610 ENSEMBL cdna:SNAP chromosome:CEL140:V:19627164:19646601:-1 11/11 None
GENEFINDER00000039639 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19633996:19635204:-1 11/11 None
Y43F8C.5 ENSEMBL cdna:known chromosome:CEL140:V:19633965:19635204:-1 gene:Y43F8C.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19633995-19635204(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.5
Entrez Gene 180284 Entrez gene
SwissProt Q9XWP2 EMBL-EBI
WormBase CE21903 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21609 Hypothetical protein Y43F8C.5 [Caenorhabditis elegans] ref|NP_507805.1| Y43F8C.5 [Caenorhabditis elegans] 1.0E-123
blast CAA21620 Hypothetical protein Y43F8C.6 [Caenorhabditis elegans] ref|NP_507806.2| Y43F8C.6 [Caenorhabditis elegans] 1.0E-123
blast CAA21609 Hypothetical protein Y43F8C.5 [Caenorhabditis elegans] ref|NP_507805.1| Y43F8C.5 [Caenorhabditis elegans] 1.0E-115
blast CAA21610 Hypothetical protein Y43F8C.7 [Caenorhabditis elegans] ref|NP_507807.1| Y43F8C.7 [Caenorhabditis elegans] 1.0E-109
blast AAF59547 Hypothetical protein Y53G8AR.1 [Caenorhabditis elegans] ref|NP_497692.1| Y53G8AR.1 [Caenorhabditis elegans] 1.0E-20
blast AAK18966 Hypothetical protein H34I24.1 [Caenorhabditis elegans] ref|NP_497629.1| H34I24.1 [Caenorhabditis elegans] 1.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000039610 1 583-605
Sequence
Target Sequence 
>C. ELEGANS:182378_S_AT
aaatacggcgacttcaatgtttctgatggttcgaattcgttttattatagtaccactaat
tcatttaaagaagtagtgaataatttgatctattgggctaacaatatcgtagatgattta
aaagaaaataagactatttgtgaagatgatgaagactgttttggtgcttacattattaat
ccaatgtataagtccttcaaaagttcacttcactgcggcgcaagcgagttagaaccaagt
agttgtgatgagcctaatgcatggtgttatttttatccaagaagtaatgtcacgtggaaa
gccacagaccagcagattggagaacctggattcgcctgtgacgccgaccgttacaacaag
aatggactgtgctcattggatcctccgacgacaaccaccaccactactacgactactaca
gtgaagccaccaccaccaactaccactccgaagtcttctgattcttccgctaacatcaat
atcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATACGGCGACTTCAATGTTTCTG 622 115 220 Antisense
GAAGACTGTTTTGGTGCTTACATTA 370 339 370 Antisense
GTCCTTCAAAAGTTCACTTCACTGC 266 477 411 Antisense
CACTTCACTGCGGCGCAAGCGAGTT 559 195 425 Antisense
GGAAAGCCACAGACCAGCAGATTGG 458 527 515 Antisense
TTGGAGAACCTGGATTCGCCTGTGA 226 709 536 Antisense
CTGTGACGCCGACCGTTACAACAAG 23 237 555 Antisense
ATGGACTGTGCTCATTGGATCCTCC 603 51 581 Antisense
TACTACGACTACTACAGTGAAGCCA 589 645 624 Antisense
TCCGAAGTCTTCTGATTCTTCCGCT 20 595 666 Antisense
TTCTTCCGCTAACATCAATATCCTC 144 691 681 Antisense
Sequence Source Affymetrix Proprietary Database