[Home] | [Total List]

[182377_at]

Description T07D3.3 /REP_DB=WormBase Gene ID /WP=CE13359 /TR=O16724 /GB=AAB66188.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.5
(-2.1)
A 		4.3
(-3)
A 		5.6
(3)
A 		5.3
(1.6)
A 		1
B 4.4
(0)
A 		5.7
(3)
A 		3.1
(-3)
A 		4.9
(1.2)
A 		3
C 5.9
(0.5)
A 		6
(0.7)
A 		3.6
(-3)
A 		7.5
(3)
A 		4
avr 4.9
(-0.3) 		5.3
(1) 		4.1
(-3) 		5.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.6
(-0.8)
A 		2.7
(-2.4)
A 		1.6
(-3)
A 		2.5
(-2.5)
A 		12.7
(3)
A 		2.6
(-2.5)
A 		11
B 5.1
(-1.2)
A 		4.1
(-1.8)
A 		11.2
(3)
A 		2.9
(-2.7)
A 		6.6
(-0.1)
A 		2.4
(-3)
A 		9
C 4.1
(-1.2)
A 		3.1
(-2.2)
A 		3.2
(-2.1)
A 		2.3
(-3)
A 		2.6
(-2.7)
A 		8.4
(3)
A 		6
avr 4.9
(-0.1) 		3.3
(-2.1) 		5.3
(0.4) 		2.6
(-3) 		7.3
(3) 		4.5
(-0.6) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.6
(3)
A 		0.9
(-2.3)
A 		1.5
(2.3)
A 		0.8
(-3)
A 		1
B 1.4
(3)
A 		1.4
(3)
A 		0.7
(-3)
A 		1
(-0.4)
A 		1
C 1.9
(3)
A 		1.7
(1)
A 		1.3
(-3)
A 		1.3
(-3)
A 		1
avr 1.6
(3) 		1.3
(0) 		1.2
(-1) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1
(-1.8)
A 		0.9
(-2)
A 		0.3
(-3)
A 		0.6
(-2.5)
A 		3.8
(3)
A 		0.6
(-2.5)
A 		4
B 1.8
(0.2)
A 		1.3
(-1.4)
A 		2.7
(3)
A 		0.8
(-3)
A 		2.7
(3)
A 		0.9
(-2.7)
A 		2
C 1.5
(-0.4)
A 		1
(-1.7)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		0.8
(-2.2)
A 		2.8
(3)
A 		2
avr 1.4
(-0.3) 		1.1
(-1.3) 		1.3
(-0.7) 		0.6
(-3) 		2.4
(3) 		1.4
(-0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5330
Sequence Type Exemplar sequence
Representative Public ID T07D3.3 NCBI
Target Description T07D3.3 /REP_DB=WormBase Gene ID /WP=CE13359 /TR=O16724 /GB=AAB66188.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061440(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061440 NCBI Caenorhabditis elegans T07D3.3 (T07D3.3) mRNA, complete cds. 10/11 None
SNAP00000029309 ENSEMBL cdna:SNAP chromosome:CEL140:II:893604:897665:1 10/11 None
T07D3.3 ENSEMBL cdna:known chromosome:CEL140:II:893869:897385:1 gene:T07D3.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029314 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:893867-897384(+) 85.59 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D3.3
Entrez Gene 173470 Entrez gene
SwissProt O16724 EMBL-EBI
WormBase CE29468 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL06054 Hypothetical protein T07D3.3 [Caenorhabditis elegans] ref|NP_493841.1| T07D3.3 [Caenorhabditis elegans] 1.0E-151
blast T32083 hypothetical protein T07D3.3 - Caenorhabditis elegans 1.0E-144
blast AAL06054 Hypothetical protein T07D3.3 [Caenorhabditis elegans] ref|NP_493841.1| T07D3.3 [Caenorhabditis elegans] 1.0E-140
blast T32083 hypothetical protein T07D3.3 - Caenorhabditis elegans 1.0E-133
blast AAB66189 Hypothetical protein T07D3.9a [Caenorhabditis elegans] ref|NP_493843.2| T07D3.9a [Caenorhabditis elegans] 3.0E-20
blast AAB66189 Hypothetical protein T07D3.9a [Caenorhabditis elegans] ref|NP_493843.2| T07D3.9a [Caenorhabditis elegans] 7.0E-20
Sequence
Target Sequence 
>C. ELEGANS:182377_AT
aacagatttgttattcctccttcttccgacgaacacactgactattacaatgtgtcaggc
tcaataagaagtggaaagttgatggaaatcatttgcctgtgcgcaatgaaggcaaaaagt
caaggagtaaagcggatgcttgacacaaaagtgaagttatctgaaattttgttgaaagac
catccgaacataaatggaactataatcggagggtttttattgcggaaagctctcgagttg
gccgaggagacggcaaaactgttttgcagtggcccagtcgcgactcgattaatggatata
attgaatttcaaaattctgtggacactggttgcgtcctgcacttcgaatccatgatactc
tatactaatgggaaatttatgcaaatacgagcgatctcaagtatcttgtctacttccgga
aaaagtgaaaagatccattatcatttttctattgaatctcttgaaacaagggtccccgaa
gtatatccaaaaggagatgaggaaattgctatatactttgaaggagggcaacgtcttgca
gatgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGATTTGTTATTCCTCCTTCTT 380 135 424 Antisense
TTCTTCCGACGAACACACTGACTAT 365 689 444 Antisense
GATGGAAATCATTTGCCTGTGCGCA 486 407 504 Antisense
GGGTTTTTATTGCGGAAAGCTCTCG 192 401 634 Antisense
AAGCTCTCGAGTTGGCCGAGGAGAC 665 149 650 Antisense
AAACTGTTTTGCAGTGGCCCAGTCG 36 127 679 Antisense
GCCCAGTCGCGACTCGATTAATGGA 23 287 695 Antisense
TCTGTGGACACTGGTTGCGTCCTGC 512 607 739 Antisense
GTCCTGCACTTCGAATCCATGATAC 41 477 757 Antisense
TCAAGTATCTTGTCTACTTCCGGAA 510 629 820 Antisense
GAGGGCAACGTCTTGCAGATGCCAT 18 403 947 Antisense
Sequence Source Affymetrix Proprietary Database