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[182375_at]

Description T06C12.9 /REP_DB=WormBase Gene ID /WP=CE16359 /TR=O18038 /GB=CAB03297.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 11.5
(-2.6)
A 		9.1
(-3)
A 		44.5
(3)
A 		36.1
(1.6)
A 		35
B 25.2
(1.8)
A 		26.1
(2)
A 		29.6
(3)
A 		8.4
(-3)
A 		21
C 4.4
(-2.8)
A 		24.6
(-1.5)
A 		1.8
(-3)
A 		94.7
(3)
A 		93
avr 13.7
(-3) 		19.9
(-1.9) 		25.3
(-0.9) 		46.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.1
(-3)
A 		21.4
(1.2)
A 		11.4
(-1.2)
A 		28.6
(3)
A 		16.3
(-0)
A 		6.2
(-2.5)
A 		25
B 3.9
(-2.1)
A 		3.1
(-2.7)
A 		2.7
(-3)
A 		5.6
(-0.9)
A 		11.1
(3)
A 		3.1
(-2.7)
A 		8
C 3
(-2.8)
A 		33.5
(3)
A 		2
(-3)
A 		8
(-1.9)
A 		2.7
(-2.9)
A 		5.5
(-2.3)
A 		32
avr 3.7
(-3) 		19.3
(3) 		5.4
(-2.3) 		14.1
(1) 		10
(-0.6) 		4.9
(-2.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.2
(-1.6)
A 		2
(-3)
A 		11.6
(3)
A 		5.3
(-0.9)
A 		10
B 8
(3)
A 		6.5
(1.5)
A 		6.9
(1.9)
A 		1.8
(-3)
A 		6
C 1.4
(-2.7)
A 		7.1
(-0.5)
A 		0.6
(-3)
A 		16
(3)
A 		15
avr 4.5
(-3) 		5.2
(-1.7) 		6.4
(0.6) 		7.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		7.6
(3)
A 		2.5
(-1.5)
A 		7.2
(2.6)
A 		4.9
(0.6)
A 		1.5
(-2.4)
A 		7
B 1.4
(-1.9)
A 		1
(-2.5)
A 		0.7
(-3)
A 		1.5
(-1.7)
A 		4.5
(3)
A 		1.1
(-2.4)
A 		4
C 1.1
(-2.6)
A 		10.2
(3)
A 		0.5
(-3)
A 		1.6
(-2.3)
A 		0.9
(-2.8)
A 		1.8
(-2.2)
A 		10
avr 1.1
(-3) 		6.3
(3) 		1.2
(-2.9) 		3.4
(-0.3) 		3.4
(-0.3) 		1.5
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14164
Sequence Type Exemplar sequence
Representative Public ID T06C12.9 NCBI
Target Description T06C12.9 /REP_DB=WormBase Gene ID /WP=CE16359 /TR=O18038 /GB=CAB03297.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074569 NCBI Caenorhabditis elegans T06C12.9 (T06C12.9) mRNA, complete cds. 11/11 None
SNAP00000035467 ENSEMBL cdna:SNAP chromosome:CEL140:V:15888246:15888643:-1 11/11 None
GENEFINDER00000035476 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15888246:15888643:-1 11/11 None
T06C12.9 ENSEMBL cdna:known chromosome:CEL140:V:15888246:15888643:-1 gene:T06C12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15888245-15888643(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06C12.9
Entrez Gene 188168 Entrez gene
SwissProt O18038 EMBL-EBI
WormBase CE16359 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03297 Hypothetical protein T06C12.9 [Caenorhabditis elegans] ref|NP_506970.1| T06C12.9 [Caenorhabditis elegans] 2.0E-39
blast CAE66185 Hypothetical protein CBG11423 [Caenorhabditis briggsae] 2.0E-25
blast CAB03247 Hypothetical protein R10D12.7 [Caenorhabditis elegans] ref|NP_506462.2| R10D12.7 [Caenorhabditis elegans] 7.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 6.2E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506970.1 2 27-44,51-73
T06C12.9 2 27-44,51-73
SNAP00000035467 2 27-44,51-73
GENEFINDER00000035476 2 27-44,51-73
Sequence
Target Sequence 
>C. ELEGANS:182375_AT
tctgatattaactgcggaccgtcggaaattgaagtaaggaacccgtatattgaaactgac
aatgatcgacttgttatggttctcctaatgttggttctcccgccaatggcagtgtacttc
aaaggccgtggatgtaccaagcatgtactaatcaacatctttctctatattcttttggtt
ctcccagcgtataagcatgcaacttggttctgttttgtgaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGATATTAACTGCGGACCGTCGG 244 601 22 Antisense
GCGGACCGTCGGAAATTGAAGTAAG 277 283 35 Antisense
AGGAACCCGTATATTGAAACTGACA 351 53 58 Antisense
ATCGACTTGTTATGGTTCTCCTAAT 391 37 86 Antisense
TGGTTCTCCTAATGTTGGTTCTCCC 268 551 98 Antisense
GCAGTGTACTTCAAAGGCCGTGGAT 126 311 130 Antisense
AGGCCGTGGATGTACCAAGCATGTA 445 53 144 Antisense
GTACTAATCAACATCTTTCTCTATA 620 459 166 Antisense
TTCTCTATATTCTTTTGGTTCTCCC 388 691 182 Antisense
GGTTCTCCCAGCGTATAAGCATGCA 35 507 198 Antisense
GCAACTTGGTTCTGTTTTGTGAAGG 113 317 220 Antisense
Sequence Source Affymetrix Proprietary Database