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[182374_at]

Description K09E3.6 /REP_DB=WormBase Gene ID /WP=CE04744 /TR=Q21396 /GB=AAA82373.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 8.7
(-2.5)
A 		9.8
(-2.4)
A 		4.8
(-3)
A 		56.2
(3)
A 		51
B 24.2
(-0.3)
A 		51.7
(3)
A 		1.6
(-3)
A 		10.6
(-1.9)
A 		50
C 4.5
(-2.7)
A 		6.5
(-2.5)
A 		2.3
(-3)
A 		48.2
(3)
A 		46
avr 12.5
(-1.4) 		22.7
(0.4) 		2.9
(-3) 		38.3
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 68.4
(3)
P 		27.6
(-1.6)
M 		15.7
(-3)
A 		30.6
(-1.3)
A 		19.8
(-2.5)
A 		23.6
(-2.1)
A 		53
B 30.7
(2.3)
P 		34.8
(3)
P 		15
(-0.6)
A 		19.7
(0.2)
A 		19.4
(0.2)
A 		1.9
(-3)
A 		33
C 17.1
(-0.5)
A 		27.5
(1.5)
P 		35.3
(3)
A 		5.1
(-2.9)
A 		4.5
(-3)
A 		29.5
(1.9)
A 		31
avr 38.7
(3) 		30
(0.8) 		22
(-1.2) 		18.5
(-2) 		14.6
(-3) 		18.3
(-2.1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.2
(-1.3)
A 		2.1
(-2.2)
A 		1.2
(-3)
A 		8.2
(3)
A 		7
B 7.7
(0.5)
A 		12.8
(3)
A 		0.4
(-3)
A 		2.3
(-2.1)
A 		12
C 1.5
(-2.4)
A 		1.9
(-2.1)
A 		0.8
(-3)
A 		8.1
(3)
A 		7
avr 4.1
(0.7) 		5.6
(2.3) 		0.8
(-3) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.6
(3)
P 		9.8
(1.2)
M 		3.4
(-3)
A 		7.8
(-0.1)
A 		6
(-1.3)
A 		5.7
(-1.5)
A 		9
B 10.7
(2.5)
P 		11.6
(3)
P 		3.6
(-1.4)
A 		5.2
(-0.5)
A 		7.9
(1)
A 		0.7
(-3)
A 		11
C 6.4
(0.6)
A 		8.4
(2)
P 		9
(2.4)
A 		1
(-3)
A 		1.5
(-2.7)
A 		9.9
(3)
A 		9
avr 9.9
(3) 		9.9
(3) 		5.3
(-2.3) 		4.7
(-3) 		5.1
(-2.5) 		5.4
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17731
Sequence Type Exemplar sequence
Representative Public ID K09E3.6 NCBI
Target Description K09E3.6 /REP_DB=WormBase Gene ID /WP=CE04744 /TR=Q21396 /GB=AAA82373.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078369 NCBI Caenorhabditis elegans K09E3.6 (K09E3.6) mRNA, complete cds. 11/11 None
SNAP00000022138 ENSEMBL cdna:SNAP chromosome:CEL140:X:17113877:17115089:-1 11/11 None
GENEFINDER00000022144 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17113877:17115089:-1 11/11 None
K09E3.6 ENSEMBL cdna:known chromosome:CEL140:X:17113877:17115089:-1 gene:K09E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17113876-17115089(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E3.6
Entrez Gene 187222 Entrez gene
SwissProt Q21396 EMBL-EBI
WormBase CE04744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82373 Hypothetical protein K09E3.6 [Caenorhabditis elegans] ref|NP_510770.1| K09E3.6 [Caenorhabditis elegans] 1.0E-177
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 2.0E-18
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.6E-31
Sequence
Target Sequence 
>C. ELEGANS:182374_AT
acaactcaatacctcattacgaagcggagcttagggacagaaccaagaaaaggaaggcga
acaaagaagaacccgaaatggaagttgacattccgaatggagaaagaaatcaagtgaaga
aacaagcaaggacaaggaaagccaatcgttcagctcgcgaactggctcaacaagaagaag
aaactgaagatttcattgaggataatgctgctaatcatgccgtcgataatcttccaacca
gagcaagaaccagtgaaacttcagctgtgagtagatcaagagccagagagcaagctccaa
caatggaacgtacacccatgattgatcaaccagaaatacaaataattggtcaggcaagtc
ttcaaggaactgctggtgatttcctcgctctccaaataagaaatctacttcaaacaaatc
cagagcgagcaaatttgatcacaagtacaatcaataaaacaattggagttcttcgagcag
gaaactgtgaggatagccatgatgtttttgaagatctactctccggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACTCAATACCTCATTACGAAGC 709 111 407 Antisense
GAAGCGGAGCTTAGGGACAGAACCA 563 341 427 Antisense
CCAATCGTTCAGCTCGCGAACTGGC 292 277 548 Antisense
CTCGCGAACTGGCTCAACAAGAAGA 390 233 560 Antisense
AATGCTGCTAATCATGCCGTCGATA 200 165 610 Antisense
TCGATAATCTTCCAACCAGAGCAAG 546 601 629 Antisense
GAACCAGTGAAACTTCAGCTGTGAG 11 347 653 Antisense
GAACGTACACCCATGATTGATCAAC 110 349 712 Antisense
GGCAAGTCTTCAAGGAACTGCTGGT 389 533 759 Antisense
AACAATTGGAGTTCTTCGAGCAGGA 399 133 864 Antisense
GTTTTTGAAGATCTACTCTCCGGAG 156 447 910 Antisense
Sequence Source Affymetrix Proprietary Database