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[182373_at]

Description F21E9.5 /REP_DB=WormBase Gene ID /WP=CE09529 /TR=O16589 /GB=AAC70880.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 7.2
(-3)
A 		15.1
(-2.5)
A 		12.9
(-2.6)
A 		98.4
(3)
A 		91
B 37
(3)
A 		4.7
(-3)
A 		5.4
(-2.9)
A 		10.1
(-2)
A 		32
C 9.1
(-0.9)
A 		3.7
(-3)
A 		19.3
(3)
A 		16.8
(2)
A 		16
avr 17.8
(-1.2) 		7.8
(-3) 		12.5
(-2.2) 		41.8
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.8
(-2)
A 		8.4
(-0)
A 		13.9
(3)
A 		3
(-3)
A 		3.9
(-2.5)
A 		9
(0.3)
A 		11
B 7
(-2.1)
A 		9.3
(-1.1)
A 		5
(-3)
A 		6.5
(-2.3)
A 		6.4
(-2.4)
A 		18.4
(3)
A 		13
C 3.7
(-2.9)
A 		22
(3)
A 		5.3
(-2.4)
A 		3.5
(-3)
A 		6.3
(-2.1)
A 		5.4
(-2.4)
A 		19
avr 5.2
(-2.4) 		13.2
(3) 		8.1
(-0.4) 		4.3
(-3) 		5.5
(-2.2) 		10.9
(1.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.6
(-3)
A 		3.3
(-2.6)
A 		3.4
(-2.6)
A 		14.4
(3)
A 		12
B 11.8
(3)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		2.2
(-2.4)
A 		11
C 3
(-1)
A 		1.1
(-3)
A 		6.7
(3)
A 		2.8
(-1.2)
A 		6
avr 5.8
(2.1) 		1.9
(-3) 		3.8
(-0.5) 		6.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(-2.7)
A 		3
(3)
A 		3
(3)
A 		0.8
(-3)
A 		1.2
(-1.9)
A 		2.2
(0.8)
A 		2
B 2.4
(-1.7)
A 		3.1
(-1)
A 		1.2
(-3)
A 		1.7
(-2.5)
A 		2.6
(-1.5)
A 		6.9
(3)
A 		6
C 1.4
(-2.3)
A 		6.7
(3)
A 		1.4
(-2.3)
A 		0.7
(-3)
A 		2
(-1.7)
A 		1.8
(-1.9)
A 		6
avr 1.6
(-2.1) 		4.3
(3) 		1.9
(-1.5) 		1.1
(-3) 		1.9
(-1.5) 		3.6
(1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18081
Sequence Type Exemplar sequence
Representative Public ID F21E9.5 NCBI
Target Description F21E9.5 /REP_DB=WormBase Gene ID /WP=CE09529 /TR=O16589 /GB=AAC70880.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075847 NCBI Caenorhabditis elegans F21E9.5 (F21E9.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000024983 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1349457:1351829:-1 9/11 None
SNAP00000024980 ENSEMBL cdna:SNAP chromosome:CEL140:X:1350354:1351829:-1 9/11 None
F21E9.5 ENSEMBL cdna:known chromosome:CEL140:X:1351359:1354907:-1 gene:F21E9.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170814 1/11 Cross Hyb Matching Probes None
SNAP00000000383 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000388 1/11 Cross Hyb Matching Probes None
Y51F10.8 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F21E9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70880 Hypothetical protein F21E9.5 [Caenorhabditis elegans] ref|NP_508248.1| F21E9.5 [Caenorhabditis elegans] 0.0
blast AAC72298 reverse transcriptase [Caenorhabditis elegans] 0.0
blast AAC48148 Hypothetical protein F20B4.7 [Caenorhabditis elegans] ref|NP_510856.1| F20B4.7 [Caenorhabditis elegans] 1.0E-169
blast AAC70880 Hypothetical protein F21E9.5 [Caenorhabditis elegans] ref|NP_508248.1| F21E9.5 [Caenorhabditis elegans] 1.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 2.0E-17
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.4E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024983 1 171-188
Sequence
Target Sequence 
>C. ELEGANS:182373_AT
aaagagtcagagtaacccacgcagccctcgaacgaaagttagttggactcaccttgacag
aacaacgcaaacgaaacattcatcgcgaagaaatgagcgtcagagtcagcgatcgacctg
aatatgaccgctgcatgcaatatgctgcctcagctggatattggctcacctttttcgaaa
agtacccatacttgagtgaagagttactggagttgcctgtaaacaaaattgaggttctcg
gaaaagtgtgctcaactttcaggtgccaatggacatcaaaaggccgctgctggcttccat
tgatcgatgttgagccaatttgcaccagactcagtattcttcaaggcgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAGTCAGAGTAACCCACGCAGC 208 123 2144 Antisense
AGTTAGTTGGACTCACCTTGACAGA 354 61 2180 Antisense
GAGCGTCAGAGTCAGCGATCGACCT 124 385 2238 Antisense
GATCGACCTGAATATGACCGCTGCA 442 417 2254 Antisense
GCATGCAATATGCTGCCTCAGCTGG 86 311 2276 Antisense
GGATATTGGCTCACCTTTTTCGAAA 177 507 2299 Antisense
GCTCAACTTTCAGGTGCCAATGGAC 567 301 2393 Antisense
TGGACATCAAAAGGCCGCTGCTGGC 151 549 2413 Antisense
TGCTGGCTTCCATTGATCGATGTTG 613 581 2431 Antisense
GAGCCAATTTGCACCAGACTCAGTA 20 385 2455 Antisense
GACTCAGTATTCTTCAAGGCGCTTT 307 373 2471 Antisense
Sequence Source Affymetrix Proprietary Database