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[182372_at]

Description C04G2.11 /REP_DB=WormBase Gene ID /WP=CE05219 /TR=Q17634 /GB=CAA93090.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 9.5
(-2.7)
A 		45.8
(3)
A 		7.8
(-3)
A 		10.3
(-2.6)
A 		38
B 18.2
(-0.4)
A 		23.8
(1.2)
A 		9.1
(-3)
A 		30.2
(3)
A 		21
C 29.5
(-0.9)
A 		59.4
(2.2)
A 		8.9
(-3)
A 		66.9
(3)
P 		58
avr 19.1
(-1.2) 		43
(3) 		8.6
(-3) 		35.8
(1.7) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 82.2
(3)
A 		4.7
(-3)
A 		27.8
(-1.2)
A 		53.9
(0.8)
M 		47.2
(0.3)
A 		5.3
(-3)
A 		78
B 24.4
(-0.5)
A 		13.3
(-3)
A 		26.2
(-0.1)
A 		40
(3)
A 		18.1
(-1.9)
A 		33
(1.4)
M 		27
C 21.3
(-3)
A 		44.5
(2.3)
A 		40.7
(1.4)
A 		25.8
(-2)
A 		47.8
(3)
A 		26.4
(-1.8)
A 		27
avr 42.6
(3) 		20.8
(-3) 		31.6
(-0) 		39.9
(2.3) 		37.7
(1.7) 		21.6
(-2.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.5
(-1.6)
A 		9.9
(3)
A 		2
(-2.6)
A 		1.5
(-3)
A 		8
B 5.8
(2.2)
A 		5.9
(2.3)
A 		2.1
(-3)
A 		6.4
(3)
A 		4
C 9.8
(-0.1)
A 		17.1
(3)
A 		3.1
(-3)
A 		11.3
(0.5)
P 		14
avr 6.4
(-0.2) 		11
(3) 		2.4
(-3) 		6.4
(-0.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 15.1
(3)
A 		1.7
(-2.8)
A 		6
(-1)
A 		13.7
(2.4)
M 		14.2
(2.6)
A 		1.3
(-3)
A 		14
B 8.5
(0.1)
A 		4.4
(-3)
A 		6.4
(-1.5)
A 		10.6
(1.7)
A 		7.4
(-0.7)
A 		12.3
(3)
M 		8
C 7.9
(-1.4)
A 		13.6
(1.9)
A 		10.4
(0)
A 		5.2
(-3)
A 		15.5
(3)
A 		8.8
(-0.9)
A 		10
avr 10.5
(1) 		6.6
(-3) 		7.6
(-2) 		9.8
(0.3) 		12.4
(3) 		7.5
(-2.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8434
Sequence Type Exemplar sequence
Representative Public ID C04G2.11 NCBI
Target Description C04G2.11 /REP_DB=WormBase Gene ID /WP=CE05219 /TR=Q17634 /GB=CAA93090.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069439 NCBI Caenorhabditis elegans C04G2.11 (C04G2.11) mRNA, complete cds. 11/11 None
C04G2.11 ENSEMBL cdna:known chromosome:CEL140:IV:10119431:10122360:-1 gene:C04G2.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040143 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10119436-10122366(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04G2.11
Entrez Gene 182235 Entrez gene
SwissProt Q17634 EMBL-EBI
WormBase CE05219 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94679 Hypothetical protein C04G2.11 [Caenorhabditis elegans] emb|CAA93090.1| Hypothetical protein C04G2.11 [Caenorhabditis elegans] ref|NP_501840.1| C04G2.11 [Caenorhabditis elegans] 0.0
blast CAE69715 Hypothetical protein CBG15986 [Caenorhabditis briggsae] 1.0E-19
blast CAE72313 Hypothetical protein CBG19450 [Caenorhabditis briggsae] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.7E-25
Sequence
Target Sequence 
>C. ELEGANS:182372_AT
cacgaaactttgcttggatccggaatttcttcagacgattgcacaatcttcgttaagaaa
gttggaaggatatcagagtatgtcattttgtggaatggataaaattaacaatccgctgac
ttattgcactggaaaattaaccgccgttcctgatcgatgtacccggtatattggaaatat
tttgtttgaaaactatatgacctccgattatgaagatattacaaattatacgaaaatatc
acaagtagatatgaaaagagtgcaacaatttgaagttatatttggaacaatttatatcca
aggaactacactaaaatcgttcacattgcccaaccttcaagaaatttatcaagttgaaga
tattgtgaataaaggatcaagacaactgggacctagaactgttatagaattcagaagaaa
cgattttttaaaagatatttcattcccaaatctcaaaattgcatattctctaatcacatt
caatttcaatggaaatttgacaatggatgatgatttttgtagaaaaatgtcaaatggagt
gaaacgagtaacagttggacttgatgttgactacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGAAACTTTGCTTGGATCCGGAA 703 197 924 Antisense
GGATCCGGAATTTCTTCAGACGATT 53 513 939 Antisense
CAATCCGCTGACTTATTGCACTGGA 170 181 1032 Antisense
TGGAAAATTAACCGCCGTTCCTGAT 107 545 1053 Antisense
GTTCCTGATCGATGTACCCGGTATA 619 441 1069 Antisense
GAAAACTATATGACCTCCGATTATG 416 355 1111 Antisense
TTCACATTGCCCAACCTTCAAGAAA 422 687 1243 Antisense
GACAACTGGGACCTAGAACTGTTAT 509 365 1304 Antisense
AAGATATTTCATTCCCAAATCTCAA 520 155 1355 Antisense
AATTGCATATTCTCTAATCACATTC 116 177 1380 Antisense
GTTGGACTTGATGTTGACTACGATT 120 437 1477 Antisense
Sequence Source Affymetrix Proprietary Database