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[182371_at]

Description F07G6.6 /REP_DB=WormBase Gene ID /WP=CE07039 /TR=Q19168 /GB=AAA96071.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 45
(-3)
M 		55.5
(-1.5)
A 		77
(1.4)
A 		88.2
(3)
P 		43
B 33.3
(-2.9)
A 		87.8
(3)
P 		32.3
(-3)
A 		80.8
(2.2)
P 		56
C 23.8
(-3)
A 		72.9
(-0.5)
P 		44.8
(-1.9)
A 		139.7
(3)
P 		116
avr 34
(-3) 		72.1
(0.3) 		51.4
(-1.5) 		102.9
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 24.2
(-1.6)
A 		39.8
(-0.6)
A 		80
(2)
P 		96.1
(3)
P 		87.5
(2.5)
P 		2
(-3)
A 		94
B 63.2
(-0.1)
P 		71.5
(0.5)
P 		63
(-0.1)
P 		108.1
(3)
P 		74
(0.7)
P 		20.1
(-3)
A 		88
C 57.5
(-1.1)
P 		59.6
(-1)
A 		63.8
(-0.8)
P 		148.3
(3)
P 		49.9
(-1.4)
P 		15.4
(-3)
A 		133
avr 48.3
(-1) 		57
(-0.5) 		68.9
(0.2) 		117.5
(3) 		70.5
(0.3) 		12.5
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.4
(0.2)
M 		12.1
(-3)
A 		20.1
(3)
A 		12.9
(-2.4)
P 		8
B 10.6
(-1.7)
A 		21.7
(3)
P 		7.5
(-3)
A 		17.2
(1.1)
P 		14
C 7.9
(-3)
A 		21
(2)
P 		15.6
(-0.1)
A 		23.6
(3)
P 		16
avr 11.6
(-3) 		18.3
(3) 		14.4
(-0.5) 		17.9
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.5
(-2.1)
A 		14.2
(0.2)
A 		17.4
(0.9)
P 		24.4
(2.5)
P 		26.4
(3)
P 		0.5
(-3)
A 		26
B 22
(0.9)
P 		23.8
(1.3)
P 		15.3
(-0.9)
P 		28.6
(2.6)
P 		30
(3)
P 		7.5
(-3)
A 		23
C 21.3
(0.9)
P 		18.2
(0.2)
A 		16.2
(-0.3)
P 		29.8
(3)
P 		16.1
(-0.3)
P 		5.2
(-3)
A 		25
avr 15.9
(-0) 		18.7
(0.7) 		16.3
(0.1) 		27.6
(3) 		24.2
(2.1) 		4.4
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18289
Sequence Type Exemplar sequence
Representative Public ID F07G6.6 NCBI
Target Description F07G6.6 /REP_DB=WormBase Gene ID /WP=CE07039 /TR=Q19168 /GB=AAA96071.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075913 NCBI Caenorhabditis elegans F07G6.6 (F07G6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000009995 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1710288:1718563:-1 11/11 None
F07G6.6 ENSEMBL cdna:known chromosome:CEL140:X:1710288:1711207:-1 gene:F07G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1710287-1711207(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G6.6
Entrez Gene 184153 Entrez gene
SwissProt Q19168 EMBL-EBI
WormBase CE07039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508314 F07G6.6 [Caenorhabditis elegans] gb|AAA96071.1| Hypothetical protein F07G6.6 [Caenorhabditis elegans] 1.0E-166
blast NP_508314 F07G6.6 [Caenorhabditis elegans] gb|AAA96071.1| Hypothetical protein F07G6.6 [Caenorhabditis elegans] 1.0E-163
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 1.0E-92
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 7.0E-89
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 9.0E-82
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.5E-60
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.4E-53
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.5E-60
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-11
Sequence
Target Sequence 
>C. ELEGANS:182371_AT
tcgaagcacgcacaaaacattaaatttgctaacaacacgaaatatagacgcaacatagtt
tcatctctcatcgagtttttcaaaacccaaaaatgtgttcacgtaaaagaaataggactt
cataagttttcttttgaacaagttcttacgattctcccatgttttgatgctaaacagctc
aaaaatattgacttgtcggggattaagtcaatttatcaattcgaaagaataaccgatttg
aagcaatggcaaaatgcagaagaacttagaatttttattcctttttctaaaatttccagt
acaataattgttcatttgtttcattttcaatgcttcagtattcactatgtgggcaaagtt
tccgttcaaaccgcgatacaaatgagagaggaccttttgagaagaagtacatttcaaagt
tgcgagataacttttgaaaaatccaagtcaaatccaattgaacttgcaaaagtattcaaa
ctggactatgccggcggcaatgagtttaagattgaattttcaaattgtaacaacaaattc
gacatttcgcttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAGCACGCACAAAACATTAAAT 581 599 292 Antisense
GACGCAACATAGTTTCATCTCTCAT 244 381 338 Antisense
GTTTCATCTCTCATCGAGTTTTTCA 673 449 349 Antisense
TTCTTACGATTCTCCCATGTTTTGA 292 687 434 Antisense
TCATTTTCAATGCTTCAGTATTCAC 619 619 612 Antisense
ATGCTTCAGTATTCACTATGTGGGC 542 35 621 Antisense
CTATGTGGGCAAAGTTTCCGTTCAA 614 161 636 Antisense
GCAAAGTTTCCGTTCAAACCGCGAT 374 315 644 Antisense
AAACTGGACTATGCCGGCGGCAATG 663 113 769 Antisense
ATGCCGGCGGCAATGAGTTTAAGAT 414 39 779 Antisense
ACAACAAATTCGACATTTCGCTTAA 207 111 821 Antisense
Sequence Source Affymetrix Proprietary Database