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[182370_at]

Description K03C7.3 /REP_DB=WormBase Gene ID /WP=CE04717 /TR=Q21188 /GB=AAA81140.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 20.6
(-2.8)
A 		17
(-3)
A 		57.3
(-0.6)
A 		116.7
(3)
A 		100
B 102.4
(3)
A 		100.1
(2.7)
A 		66.7
(-1.3)
A 		52.5
(-3)
A 		50
C 20.4
(-3)
A 		69.4
(-0.2)
A 		34.3
(-2.2)
A 		124.1
(3)
A 		104
avr 47.8
(-3) 		62.2
(-1.3) 		52.8
(-2.4) 		97.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 19.9
(-2.4)
A 		14.4
(-2.8)
A 		11.8
(-3)
A 		61.1
(0.5)
A 		95.8
(3)
A 		70.6
(1.2)
A 		84
B 38.2
(-1.1)
A 		72.9
(1.8)
A 		15.8
(-3)
A 		86.5
(3)
A 		27.4
(-2)
A 		45.8
(-0.5)
A 		71
C 49.9
(3)
A 		16.6
(-2.1)
A 		41.4
(1.7)
A 		16.3
(-2.2)
A 		11.1
(-3)
A 		13.8
(-2.6)
A 		39
avr 36
(-0.5) 		34.6
(-0.8) 		23
(-3) 		54.6
(3) 		44.8
(1.1) 		43.4
(0.9) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 7.5
(-1.3)
A 		3.7
(-3)
A 		15
(2.1)
A 		17.1
(3)
A 		13
B 32.7
(3)
A 		24.7
(0.8)
A 		15.4
(-1.8)
A 		11.2
(-3)
A 		22
C 6.8
(-3)
A 		20
(2.6)
A 		11.9
(-0.8)
A 		20.9
(3)
A 		14
avr 15.7
(1.2) 		16.1
(2.2) 		14.1
(-3) 		16.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.7
(-2.7)
A 		5.1
(-2.4)
A 		2.6
(-3)
A 		15.5
(-0.1)
A 		28.9
(3)
A 		17.2
(0.3)
A 		26
B 13.3
(-0.2)
A 		24.3
(3)
A 		3.8
(-3)
A 		22.9
(2.6)
A 		11.1
(-0.9)
A 		17.1
(0.9)
A 		21
C 18.5
(3)
A 		5.1
(-2.3)
A 		10.5
(-0.2)
A 		3.3
(-3)
A 		3.6
(-2.9)
A 		4.6
(-2.5)
A 		15
avr 11.8
(1.2) 		11.5
(1) 		5.6
(-3) 		13.9
(2.6) 		14.5
(3) 		13
(2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18191
Sequence Type Exemplar sequence
Representative Public ID K03C7.3 NCBI
Target Description K03C7.3 /REP_DB=WormBase Gene ID /WP=CE04717 /TR=Q21188 /GB=AAA81140.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076264 NCBI Caenorhabditis elegans K03C7.3 (K03C7.3) mRNA, complete cds. 11/11 None
K03C7.3 ENSEMBL cdna:known chromosome:CEL140:X:3827211:3829280:-1 gene:K03C7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3827211-3829281(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03C7.3
Entrez Gene 186931 Entrez gene
SwissProt Q21188 EMBL-EBI
WormBase CE04717 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81140 Hypothetical protein K03C7.3 [Caenorhabditis elegans] ref|NP_508665.1| K03C7.3 [Caenorhabditis elegans] 7.0E-90
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508665.1 2 42-61,120-142
K03C7.3 2 42-61,120-142
Sequence
Target Sequence 
>C. ELEGANS:182370_AT
tgagcacttgcccacggatgaggggcttacaaaaaaggttgtccgacggcaagaaggacg
cgtcctttgaatgcgtgacgctactgaaaagtgttttttgtgcgagaaagaaaaagaaac
gtttcttcttgtcctttctttccttttccacttgttgctccattctgggttggttctttt
tgtctcattcaaccatgcatacatatttttcgtttttgtgcaccaatagcaccaatataa
gccctccaaatgtttttgttggaaaggaggaaaaggacccttcactcaaaatgttgccaa
ttgttcggttttcttttctctcgttgcattcccagcatgagaacgtgtcaaaacgacact
tggctcctcttggaatatattttcgcttttttttcctgagacattgctttgcattcttgt
ttttcacagagatggggagaatgatgaattgttgtggagaccaatgtcctcccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCACTTGCCCACGGATGAGGGG 116 561 14 Antisense
GGACGCGTCCTTTGAATGCGTGACG 527 523 69 Antisense
TTGTTGCTCCATTCTGGGTTGGTTC 693 701 165 Antisense
GTTCTTTTTGTCTCATTCAACCATG 27 445 186 Antisense
GCACCAATATAAGCCCTCCAAATGT 310 315 242 Antisense
AGGACCCTTCACTCAAAATGTTGCC 632 49 287 Antisense
TGTTGCCAATTGTTCGGTTTTCTTT 587 561 305 Antisense
GACACTTGGCTCCTCTTGGAATATA 349 367 368 Antisense
TTCGCTTTTTTTTCCTGAGACATTG 231 697 395 Antisense
ATTGCTTTGCATTCTTGTTTTTCAC 280 7 416 Antisense
TTGTGGAGACCAATGTCCTCCCGTT 481 707 465 Antisense
Sequence Source Affymetrix Proprietary Database