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[182369_at]

Description B0511.2 /REP_DB=WormBase Gene ID /WP=CE17341 /TR=O61824 /GB=AAC17651.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 29      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 76      4grp_total > 06      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 171.2
(-0.1)
P 		130.6
(-3)
P 		141.3
(-2.2)
P 		215.4
(3)
P 		85
B 134.9
(1.5)
P 		110
(-3)
P 		140.4
(2.5)
P 		143.4
(3)
P 		33
C 167
(-0.4)
P 		91
(-3)
P 		140.7
(-1.3)
P 		265.9
(3)
P 		175
avr 157.7
(-0.1) 		110.5
(-3) 		140.8
(-1.1) 		208.2
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 104.7
(-3)
P 		114
(-2.4)
P 		140.9
(-0.8)
P 		148.5
(-0.3)
P 		113.2
(-2.5)
P 		201.4
(3)
P 		97
B 114
(-3)
P 		130.5
(-2.1)
P 		125.7
(-2.4)
P 		123.8
(-2.5)
P 		145.5
(-1.3)
P 		222.4
(3)
P 		108
C 98.9
(-3)
P 		151.2
(0.9)
P 		99.5
(-3)
P 		141.1
(0.1)
P 		144.3
(0.4)
P 		179.6
(3)
P 		81
avr 105.9
(-3) 		131.9
(-1.4) 		122
(-2) 		137.8
(-1) 		134.3
(-1.2) 		201.1
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 62.3
(3)
P 		28.3
(-3)
P 		36.9
(-1.5)
P 		31.5
(-2.4)
P 		34
B 43
(3)
P 		27.2
(-3)
P 		32.5
(-1)
P 		30.6
(-1.7)
P 		16
C 55.3
(3)
P 		26.2
(-3)
P 		49
(1.7)
P 		44.8
(0.8)
P 		29
avr 53.5
(3) 		27.2
(-3) 		39.5
(-0.2) 		35.6
(-1.1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 19.3
(-3)
P 		40.5
(1.3)
P 		30.7
(-0.7)
P 		37.7
(0.7)
P 		34.2
(0)
P 		49
(3)
P 		30
B 39.7
(-1.9)
P 		43.4
(-1.5)
P 		30.5
(-3)
P 		32.8
(-2.7)
P 		59.1
(0.3)
P 		82.9
(3)
P 		52
C 36.7
(-1)
P 		46.1
(0.6)
P 		25.3
(-3)
P 		28.4
(-2.5)
P 		46.7
(0.7)
P 		60.1
(3)
P 		35
avr 31.9
(-2.5) 		43.3
(-0.5) 		28.8
(-3) 		33
(-2.3) 		46.7
(0.1) 		64
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1485
Sequence Type Exemplar sequence
Representative Public ID B0511.2 NCBI
Target Description B0511.2 /REP_DB=WormBase Gene ID /WP=CE17341 /TR=O61824 /GB=AAC17651.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060388 NCBI Caenorhabditis elegans B0511.2 (B0511.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031170 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10659151:10661301:1 9/11 None
B0511.2 ENSEMBL cdna:known chromosome:CEL140:I:10659151:10661083:1 gene:B0511.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031164 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006809 7/11 Cross Hyb Matching Probes None
SNAP00000006798 8/11 Cross Hyb Matching Probes None
GENEFINDER00000024281 5/11 Cross Hyb Matching Probes None
SNAP00000028395 8/11 Cross Hyb Matching Probes None
GENEFINDER00000028410 8/11 Cross Hyb Matching Probes None
C01G12.12 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10659081-10661014(+) 94.77 100.0
Public Domain and Genome References
Gene Title
Ensembl B0511.2
Entrez Gene 182015 Entrez gene
SwissProt O61824 EMBL-EBI
WormBase CE17341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17651 Hypothetical protein B0511.2 [Caenorhabditis elegans] ref|NP_492789.1| B0511.2 [Caenorhabditis elegans] 0.0
blast AAC17651 Hypothetical protein B0511.2 [Caenorhabditis elegans] ref|NP_492789.1| B0511.2 [Caenorhabditis elegans] 1.0E-104
blast NP_491014 Cysteinyl tRNA Synthetase family member (crs-1) [Caenorhabditis elegans] gb|AAK68426.1| Cysteinyl trna synthetase protein 1, isoform b [Caenorhabditis elegans] 3.0E-35
blast NP_491013 Cysteinyl tRNA Synthetase family member (crs-1) [Caenorhabditis elegans] gb|AAC64633.1| Cysteinyl trna synthetase protein 1, isoform a [Caenorhabditis elegans] 3.0E-35
blast NP_491014 Cysteinyl tRNA Synthetase family member (crs-1) [Caenorhabditis elegans] gb|AAK68426.1| Cysteinyl trna synthetase protein 1, isoform b [Caenorhabditis elegans] 2.0E-23
blast NP_491013 Cysteinyl tRNA Synthetase family member (crs-1) [Caenorhabditis elegans] gb|AAC64633.1| Cysteinyl trna synthetase protein 1, isoform a [Caenorhabditis elegans] 2.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492789.1 1 106-128
B0511.2 1 106-128
Sequence
Target Sequence 
>C. ELEGANS:182369_AT
aaactcaatctcacgtatttcataatttttttttcgattttaatgaaaaatatattcaat
attacgttgtcgctgcattagaagatttcaagacaaaattcgaaatatatgcgaacaaga
agaagctaagaaactacaagtcagatcggtccgaaggcaatcaaaagttccaagcagaag
aagtgaagctcatggaagaggttggaaagcacaagtctgaagttcatgaagcactcggcg
atttggtggatacaagatcaattccactcagcaaccagaatattggattcgtttccgagg
ataagtgcaatggtgaaggagcttcaacatcgttcaacgaggaagccgttttcatgccgt
acctcaatgatcctgttcaattccgtaaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCAATCTCACGTATTTCATAA 49 127 926 Antisense
TTCAATATTACGTTGTCGCTGCATT 168 685 980 Antisense
GTTGTCGCTGCATTAGAAGATTTCA 531 437 991 Antisense
GAAACTACAAGTCAGATCGGTCCGA 388 335 1055 Antisense
GATCGGTCCGAAGGCAATCAAAAGT 369 417 1069 Antisense
GTCTGAAGTTCATGAAGCACTCGGC 27 471 1140 Antisense
AGCACTCGGCGATTTGGTGGATACA 494 77 1155 Antisense
ACAAGATCAATTCCACTCAGCAACC 579 113 1177 Antisense
ACGAGGAAGCCGTTTTCATGCCGTA 668 91 1262 Antisense
GTACCTCAATGATCCTGTTCAATTC 706 457 1284 Antisense
TGATCCTGTTCAATTCCGTAAAAAA 391 563 1293 Antisense
Sequence Source Affymetrix Proprietary Database