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[182368_at]

Description C30G4.2 /REP_DB=WormBase Gene ID /WP=CE06898 /TR=Q18330 /GB=AAA93420.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 5.7
(-1.9)
A 		8.9
(2.5)
A 		4.9
(-3)
A 		9.3
(3)
A 		4
B 13.4
(2.7)
A 		8.4
(-1.8)
A 		7.1
(-3)
A 		13.7
(3)
A 		7
C 29.9
(3)
A 		8.2
(-2.3)
A 		5.2
(-3)
A 		10.7
(-1.7)
A 		25
avr 16.3
(3) 		8.5
(-1.4) 		5.7
(-3) 		11.2
(0.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.4
(-3)
A 		5.5
(-1.3)
A 		6.9
(-0.2)
A 		11
(3)
A 		9.6
(1.9)
A 		3.6
(-2.8)
A 		8
B 10.3
(-1.6)
A 		6.5
(-2.8)
A 		24.8
(3)
A 		22.9
(2.4)
A 		12.1
(-1.1)
A 		6
(-3)
A 		19
C 7.9
(-2.2)
A 		34
(3)
A 		18.6
(-0.1)
A 		3.8
(-3)
A 		32.5
(2.7)
A 		7.9
(-2.2)
A 		30
avr 7.2
(-2.3) 		15.3
(1.6) 		16.8
(2.4) 		12.6
(0.3) 		18.1
(3) 		5.8
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(3)
A 		1.9
(1.5)
A 		1.3
(-3)
A 		1.4
(-2.3)
A 		1
B 4.3
(3)
A 		2.1
(-2.1)
A 		1.7
(-3)
A 		2.9
(-0.2)
A 		3
C 9.9
(3)
A 		2.4
(-2.6)
A 		1.8
(-3)
A 		1.8
(-3)
A 		8
avr 5.4
(3) 		2.1
(-2.2) 		1.6
(-3) 		2
(-2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2
(0.7)
A 		1.5
(-0.7)
A 		2.8
(2.7)
A 		2.9
(3)
A 		0.9
(-2.2)
A 		2
B 3.6
(-0.8)
A 		2.2
(-3)
A 		6
(2.8)
A 		6.1
(3)
A 		4.9
(1.2)
A 		2.2
(-3)
A 		4
C 2.9
(-1.7)
A 		10.4
(2.9)
A 		4.7
(-0.6)
A 		0.8
(-3)
A 		10.5
(3)
A 		2.6
(-1.9)
A 		10
avr 2.4
(-2.3) 		4.9
(1.3) 		4.1
(0.1) 		3.2
(-1.1) 		6.1
(3) 		1.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17527
Sequence Type Exemplar sequence
Representative Public ID C30G4.2 NCBI
Target Description C30G4.2 /REP_DB=WormBase Gene ID /WP=CE06898 /TR=Q18330 /GB=AAA93420.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078353 NCBI Caenorhabditis elegans C30G4.2 (C30G4.2) mRNA, complete cds. 11/11 None
SNAP00000042116 ENSEMBL cdna:SNAP chromosome:CEL140:X:17044028:17045216:-1 11/11 None
GENEFINDER00000042128 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17044258:17045216:-1 11/11 None
C30G4.2 ENSEMBL cdna:known chromosome:CEL140:X:17044324:17045216:-1 gene:C30G4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17044323-17045216(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30G4.2
Entrez Gene 181744 Entrez gene
SwissProt Q18330 EMBL-EBI
WormBase CE06898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93420 Hypothetical protein C30G4.2 [Caenorhabditis elegans] ref|NP_510754.1| C30G4.2 [Caenorhabditis elegans] 1.0E-112
blast AAA93420 Hypothetical protein C30G4.2 [Caenorhabditis elegans] ref|NP_510754.1| C30G4.2 [Caenorhabditis elegans] 1.0E-110
blast AAA93420 Hypothetical protein C30G4.2 [Caenorhabditis elegans] ref|NP_510754.1| C30G4.2 [Caenorhabditis elegans] 1.0E-107
blast CAE69709 Hypothetical protein CBG15977 [Caenorhabditis briggsae] 2.0E-83
blast CAE69709 Hypothetical protein CBG15977 [Caenorhabditis briggsae] 3.0E-70
blast CAE69709 Hypothetical protein CBG15977 [Caenorhabditis briggsae] 2.0E-68
Sequence
Target Sequence 
>C. ELEGANS:182368_AT
gacataactctagctgttgccaaactgaatttcaacaatgttgattacctcggtattgaa
atcaaatacaatcaatgccttccccgtggaacatcttgcgagtactccaccgaagtgact
gtcatgaacagaaagttcaatctcaaacaccatcagtttgacaatgataggctttatctc
ccgactttcatgaaatgggatgatgttgtggacttgacatatgaagatgaatcagtaaga
tgttgtgcgaaagtggtgggatttcgccatttagagaatgttgagcgaagtttcggagat
tgcagttatcatggaacaagtgacctgcggcatgttacaactgtcaacttgactattaca
gttggaagatacaagattttagtgaacaaagattacctgatgtcaatgtcaggattcttc
cggacaattttagagaatgcggataagaactccaggcatgacgatctcgtgctaacagag
tcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATAACTCTAGCTGTTGCCAAAC 270 371 34 Antisense
TCAAATACAATCAATGCCTTCCCCG 401 629 95 Antisense
CCCGTGGAACATCTTGCGAGTACTC 287 261 116 Antisense
GCGAGTACTCCACCGAAGTGACTGT 224 289 131 Antisense
AAGTTCAATCTCAAACACCATCAGT 147 157 166 Antisense
CTTTATCTCCCGACTTTCATGAAAT 316 223 205 Antisense
AAGTGGTGGGATTTCGCCATTTAGA 339 157 284 Antisense
GTGACCTGCGGCATGTTACAACTGT 254 483 353 Antisense
GTCAGGATTCTTCCGGACAATTTTA 406 465 441 Antisense
AGAACTCCAGGCATGACGATCTCGT 636 73 479 Antisense
GACGATCTCGTGCTAACAGAGTCGA 235 379 493 Antisense
Sequence Source Affymetrix Proprietary Database