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[182367_at]

Description K02A6.2 /REP_DB=WormBase Gene ID /WP=CE02794 /TR=Q21111 /GB=AAC47061.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 92      6grp_total > 97      4grp_total > 12      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 808
1 2 3 4 range
A 461.9
(-1.4)
P 		306.5
(-2.7)
P 		273.8
(-3)
P 		988
(3)
P 		714
B 522.7
(-0.8)
P 		345.1
(-2.2)
P 		237.8
(-3)
P 		1000
(3)
P 		762
C 529.6
(-0.1)
P 		337.5
(-1.8)
P 		192.1
(-3)
P 		895.5
(3)
P 		703
avr 504.7
(-0.8) 		329.7
(-2.2) 		234.6
(-3) 		961.2
(3) 		727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 232.1
(-2)
P 		190.7
(-2.8)
P 		177.9
(-3)
P 		244.5
(-1.8)
P 		467.6
(2.2)
P 		511.4
(3)
P 		334
B 227
(-2.1)
P 		190.5
(-2.6)
P 		159.1
(-3)
P 		291.7
(-1.2)
P 		408.9
(0.3)
P 		612.7
(3)
P 		454
C 237.7
(-2)
P 		164.6
(-2.8)
P 		142
(-3)
P 		282.3
(-1.6)
P 		412.5
(-0.2)
P 		731.3
(3)
P 		589
avr 232.3
(-2.1) 		181.9
(-2.7) 		159.7
(-3) 		272.8
(-1.5) 		429.7
(0.5) 		618.5
(3) 		459
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 168.2
(3)
P 		66.5
(-3)
P 		71.6
(-2.7)
P 		144.6
(1.6)
P 		102
B 166.7
(1.2)
P 		85.2
(-1.9)
P 		55.1
(-3)
P 		213.1
(3)
P 		158
C 175.3
(3)
P 		97
(-1.3)
P 		67
(-3)
P 		151
(1.7)
P 		108
avr 170.1
(3) 		82.9
(-2) 		64.6
(-3) 		169.6
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 42.8
(-2.8)
P 		67.8
(-1.3)
P 		38.7
(-3)
P 		62
(-1.6)
P 		141.1
(3)
P 		124.5
(2)
P 		102
B 79
(-1.7)
P 		63.4
(-2.2)
P 		38.6
(-3)
P 		77.3
(-1.8)
P 		166.1
(1)
P 		228.5
(3)
P 		190
C 88.1
(-1.5)
P 		50.2
(-2.6)
P 		36.1
(-3)
P 		56.8
(-2.4)
P 		133.5
(-0.2)
P 		244.8
(3)
P 		209
avr 70
(-1.8) 		60.5
(-2.2) 		37.8
(-3) 		65.4
(-2) 		146.9
(1.1) 		199.3
(3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16906
Sequence Type Exemplar sequence
Representative Public ID K02A6.2 NCBI
Target Description K02A6.2 /REP_DB=WormBase Gene ID /WP=CE02794 /TR=Q21111 /GB=AAC47061.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076986 NCBI Caenorhabditis elegans K02A6.2 (K02A6.2) mRNA, complete cds. 11/11 None
SNAP00000011090 ENSEMBL cdna:SNAP chromosome:CEL140:X:8224329:8224840:-1 11/11 None
GENEFINDER00000011093 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8224329:8224840:-1 11/11 None
K02A6.2 ENSEMBL cdna:known chromosome:CEL140:X:8224329:8224738:-1 gene:K02A6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8224327-8224737(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02A6.2
Entrez Gene 186862 Entrez gene
SwissProt Q21111 EMBL-EBI
WormBase CE02794 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47061 Hypothetical protein K02A6.2 [Caenorhabditis elegans] ref|NP_509387.1| K02A6.2 [Caenorhabditis elegans] 7.0E-63
blast AAC47061 Hypothetical protein K02A6.2 [Caenorhabditis elegans] ref|NP_509387.1| K02A6.2 [Caenorhabditis elegans] 8.0E-63
blast CAE74860 Hypothetical protein CBG22713 [Caenorhabditis briggsae] 1.0E-44
blast CAE74860 Hypothetical protein CBG22713 [Caenorhabditis briggsae] 7.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000011090 1 5-27
GENEFINDER00000011093 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182367_AT
tggggaaccctacgaactatcaagcaatgaatgacggaaaaaataatgaaatgattccaa
ccgcttttgaggggcccaaagacgatctcgaaagtggaaacatcaataattttgaaactg
aacatgctcgaaactgtttcttcacgccggtccaatgtatgctgcctatgaccgattctc
acaaagacgttcaatcactccacggtgtgtattctccaaccgctacccaagttcgccgga
gtgttgacactatgcttacctctccatggggatatacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGGAACCCTACGAACTATCAAGC 621 553 14 Antisense
GAAATGATTCCAACCGCTTTTGAGG 311 361 61 Antisense
TGAGGGGCCCAAAGACGATCTCGAA 313 565 81 Antisense
TGCTCGAAACTGTTTCTTCACGCCG 447 581 138 Antisense
CGGTCCAATGTATGCTGCCTATGAC 702 243 161 Antisense
CTGCCTATGACCGATTCTCACAAAG 628 235 175 Antisense
TCACAAAGACGTTCAATCACTCCAC 97 629 192 Antisense
ATCACTCCACGGTGTGTATTCTCCA 625 23 207 Antisense
TACCCAAGTTCGCCGGAGTGTTGAC 600 647 237 Antisense
GAGTGTTGACACTATGCTTACCTCT 345 401 252 Antisense
GCTTACCTCTCCATGGGGATATACG 496 301 267 Antisense
Sequence Source Affymetrix Proprietary Database