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[182366_at]

Description B0205.9 /REP_DB=WormBase Gene ID /WP=CE17323 /TR=O61745 /GB=AAC16995.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_high_8_8 > 18      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 15      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 194.3
(2)
P 		158.2
(-2.1)
P 		150.4
(-3)
P 		203.5
(3)
P 		53
B 169.4
(3)
P 		77.3
(-3)
A 		113.9
(-0.6)
P 		157.8
(2.2)
P 		92
C 192.6
(3)
P 		107.5
(-3)
A 		141.3
(-0.6)
P 		166.2
(1.1)
P 		85
avr 185.4
(3) 		114.3
(-3) 		135.2
(-1.2) 		175.8
(2.2) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 178
(-3)
P 		214.9
(-1.4)
P 		186.4
(-2.6)
P 		203.2
(-1.9)
P 		275.7
(1.3)
P 		315.8
(3)
P 		138
B 153.5
(-3)
P 		181.7
(-2.2)
P 		223.1
(-1)
P 		251.2
(-0.2)
P 		295.9
(1.1)
P 		361.9
(3)
P 		208
C 135.6
(-3)
P 		209.2
(-0.8)
P 		262.4
(0.7)
P 		310.4
(2.2)
P 		240.3
(0.1)
P 		338.9
(3)
P 		203
avr 155.7
(-3) 		201.9
(-1.5) 		224
(-0.8) 		254.9
(0.2) 		270.6
(0.8) 		338.9
(3) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 70.7
(3)
P 		34.3
(-2.3)
P 		39.3
(-1.6)
P 		29.8
(-3)
P 		41
B 54
(3)
P 		19.1
(-3)
A 		26.4
(-1.7)
P 		33.6
(-0.5)
P 		35
C 63.8
(3)
P 		30.9
(-2.5)
A 		49.2
(0.6)
P 		28
(-3)
P 		36
avr 62.8
(3) 		28.1
(-3) 		38.3
(-1.2) 		30.5
(-2.6) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 32.8
(-3)
P 		76.4
(2.2)
P 		40.6
(-2.1)
P 		51.5
(-0.8)
P 		83.2
(3)
P 		76.9
(2.3)
P 		50
B 53.4
(-3)
P 		60.5
(-2.5)
P 		54.2
(-2.9)
P 		66.5
(-2)
P 		120.2
(1.9)
P 		134.9
(3)
P 		82
C 50.3
(-3)
P 		63.8
(-1.7)
P 		66.8
(-1.4)
P 		62.4
(-1.8)
P 		77.7
(-0.4)
P 		113.4
(3)
P 		63
avr 45.5
(-3) 		66.9
(-1) 		53.9
(-2.2) 		60.1
(-1.6) 		93.7
(1.6) 		108.4
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1309
Sequence Type Exemplar sequence
Representative Public ID B0205.9 NCBI
Target Description B0205.9 /REP_DB=WormBase Gene ID /WP=CE17323 /TR=O61745 /GB=AAC16995.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060405 NCBI Caenorhabditis elegans B0205.9 (B0205.9) mRNA, complete cds. 11/11 None
SNAP00000024663 ENSEMBL cdna:SNAP chromosome:CEL140:I:10728947:10731396:1 11/11 None
GENEFINDER00000024681 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10728947:10731396:1 11/11 None
B0205.9 ENSEMBL cdna:known chromosome:CEL140:I:10728947:10731603:1 gene:B0205.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10728877-10731327(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0205.9
Entrez Gene 172975 Entrez gene
SwissProt O61745 EMBL-EBI
WormBase CE17323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16995 Hypothetical protein B0205.9 [Caenorhabditis elegans] ref|NP_492806.1| B0205.9 [Caenorhabditis elegans] 0.0
blast AAC02565 Hypothetical protein B0212.3 [Caenorhabditis elegans] ref|NP_500369.1| B0212.3 [Caenorhabditis elegans] 1.0E-112
blast AAC68984 Hypothetical protein M57.1 [Caenorhabditis elegans] ref|NP_500368.1| M57.1 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 2.2E-60
Pfam IPR006570 EMBL-EBI SPK 5.2E-57
Pfam IPR006570 EMBL-EBI SPK 3.6E-14
Pfam IPR006570 EMBL-EBI SPK 3.9E-12
Sequence
Target Sequence 
>C. ELEGANS:182366_AT
gcacaagaatctttcgtcttccgtggcttcttgaagcaggagcctgtatttgagcaattc
catattcaaaacatgtcaaacaacctggtgaatctacccattccaccagagattgaggaa
accccagttcaagaaggtcaccatgttgagccatcgggaatcactggatctgacgggatt
agacttcacaagtttttgaattcgttagaactcatgctcacatctctcgaatcagatact
ctaaacgatttaatgcaagagattgaagagattcgccgtcgaacagatgagattcttcca
tcggagctagtgattactaccctccagacattctttttgggaatcactcgaaagtttcgg
ccggaaacctcagcaccgagcaaatcagcaaaagagtgtctgagaatcttcaaatatgct
ctcctttggcttaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAAGAATCTTTCGTCTTCCGTG 257 317 1048 Antisense
CGTCTTCCGTGGCTTCTTGAAGCAG 89 245 1062 Antisense
GCAGGAGCCTGTATTTGAGCAATTC 266 311 1083 Antisense
CAACCTGGTGAATCTACCCATTCCA 142 185 1128 Antisense
AGAAGGTCACCATGTTGAGCCATCG 421 75 1179 Antisense
GAGCCATCGGGAATCACTGGATCTG 1 385 1195 Antisense
GGATCTGACGGGATTAGACTTCACA 155 509 1213 Antisense
TCATGCTCACATCTCTCGAATCAGA 361 621 1259 Antisense
GGAGCTAGTGATTACTACCCTCCAG 33 521 1350 Antisense
TACCCTCCAGACATTCTTTTTGGGA 3 651 1365 Antisense
AAATATGCTCTCCTTTGGCTTAAAA 642 115 1459 Antisense
Sequence Source Affymetrix Proprietary Database