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[182364_at]

Description C36C5.3 /REP_DB=WormBase Gene ID /WP=CE08592 /TR=O16411 /GB=AAB65927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 08      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 9.5
(3)
A 		4.2
(-2.8)
A 		4.8
(-2.1)
A 		4
(-3)
A 		6
B 9.2
(-2.4)
A 		8
(-3)
A 		20.9
(3)
A 		8.3
(-2.9)
A 		13
C 6.8
(-3)
A 		11.6
(-2.5)
A 		13.3
(-2.4)
A 		69.9
(3)
A 		63
avr 8.5
(-2.8) 		7.9
(-3) 		13
(-1.4) 		27.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 12
(-1)
A 		25.2
(3)
A 		10.5
(-1.5)
A 		12.2
(-1)
A 		5.5
(-3)
A 		17.4
(0.6)
A 		20
B 7
(-1.8)
A 		8.4
(-1.4)
A 		21
(2.3)
A 		4.5
(-2.6)
A 		23.4
(3)
A 		3
(-3)
A 		20
C 14.6
(-1.2)
A 		4.9
(-2.6)
A 		13.7
(-1.3)
A 		43.3
(3)
A 		2.1
(-3)
A 		4.4
(-2.7)
A 		41
avr 11.2
(-1.5) 		12.8
(-0.7) 		15.1
(0.5) 		20
(3) 		10.3
(-2) 		8.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.5
(3)
A 		0.9
(-2.4)
A 		1.3
(-1.6)
A 		0.6
(-3)
A 		3
B 2.9
(-0.9)
A 		2
(-2.6)
A 		4.9
(3)
A 		1.8
(-3)
A 		3
C 2.2
(-3)
A 		3.3
(-2.3)
A 		4.6
(-1.5)
A 		11.8
(3)
A 		10
avr 2.9
(-1.2) 		2.1
(-3) 		3.6
(0.5) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.2
(-2.6)
A 		9
(3)
A 		2.3
(-2.5)
A 		3.1
(-1.8)
A 		1.7
(-3)
A 		4.2
(-0.9)
A 		7
B 2.4
(-2.1)
A 		2.8
(-1.8)
A 		5.1
(-0.1)
A 		1.2
(-2.9)
A 		9.5
(3)
A 		1.1
(-3)
A 		8
C 5.4
(0.5)
A 		1.5
(-2.4)
A 		3.5
(-0.9)
A 		8.7
(3)
A 		0.7
(-3)
A 		1.5
(-2.4)
A 		8
avr 3.3
(-0.1) 		4.4
(3) 		3.6
(0.7) 		4.3
(2.7) 		4
(1.9) 		2.3
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15358
Sequence Type Exemplar sequence
Representative Public ID C36C5.3 NCBI
Target Description C36C5.3 /REP_DB=WormBase Gene ID /WP=CE08592 /TR=O16411 /GB=AAB65927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071473 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-6) (srbc-6) mRNA, complete cds. 11/11 None
GENEFINDER00000036669 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3169965:3171235:1 11/11 None
C36C5.3 ENSEMBL cdna:known chromosome:CEL140:V:3169965:3171235:1 gene:C36C5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036663 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3169964-3171235(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-6
Ensembl C36C5.3
Entrez Gene 183259 Entrez gene
SwissProt O16411 EMBL-EBI
WormBase CE38041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503874 Serpentine Receptor, class BC (class B-like) family member (srbc-6) [Caenorhabditis elegans] gb|AAB65927.2| Hypothetical protein C36C5.3 [Caenorhabditis elegans] 1.0E-157
blast AAK18887 Serpentine receptor, class bc (class b-like) protein 9 [Caenorhabditis elegans] ref|NP_504927.2| Serpentine Receptor, class BC (class B-like) family member (srbc-9) [Caenorhabditis elegans] 1.0E-120
blast AAC27086 Serpentine receptor, class bc (class b-like) protein 2 [Caenorhabditis elegans] ref|NP_503940.2| Serpentine Receptor, class BC (class B-like) family member (srbc-2) [Caenorhabditis elegans] 1.0E-117
blast NP_503874 Serpentine Receptor, class BC (class B-like) family member (srbc-6) [Caenorhabditis elegans] gb|AAB65927.2| Hypothetical protein C36C5.3 [Caenorhabditis elegans] 3.0E-63
blast AAF99931 Serpentine receptor, class bc (class b-like) protein 3 [Caenorhabditis elegans] ref|NP_503915.2| Serpentine Receptor, class BC (class B-like) family member (srbc-3) [Caenorhabditis elegans] 4.0E-56
blast AAC27086 Serpentine receptor, class bc (class b-like) protein 2 [Caenorhabditis elegans] ref|NP_503940.2| Serpentine Receptor, class BC (class B-like) family member (srbc-2) [Caenorhabditis elegans] 5.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 9.0E-88
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-25
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 6.8E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503874.2 7 15-36,48-70,85-107,128-150,185-204,225-247,257-275
C36C5.3 7 15-36,48-70,85-107,128-150,185-204,225-247,257-275
GENEFINDER00000036669 5 15-36,49-71,86-108,113-135,185-204
Sequence
Target Sequence 
>C. ELEGANS:182364_AT
gatttgctccgttcttacaattgtcatgaacatctattttatcaaacgcatcgggaaaac
tcgtcagaaaatgattctcttcttctaccgtctttttattgacgcggcctatggtgttct
ggcttgcgcctacttgacgttttgcattttgtattcatttttcactgaggagcttcgtgc
ccagcaagtttttataattttcgtcggctttccacttcagacagcaggtgctatgagaat
gattgttgcagttgcgatttcgcttgaaagggttttggttgtgtttgctcttaactttgc
attttccggtgttctttcgacaaaactgctgattttccataaatcacatagacagaatac
aggcggagtgcattggaaggtgaatcatcttgctatggttgatgctgcaaatgtattctt
atgtaatttttttccgacatcaatttccaattatatagctcaatttccgttttcaagctt
taagaacattggaccttacgtgttcatcataaaacttatcggaagtgcagtcgaatcgta
ctttattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGCTCCGTTCTTACAATTGTC 547 427 78 Antisense
TCTTCTACCGTCTTTTTATTGACGC 115 617 158 Antisense
TTATTGACGCGGCCTATGGTGTTCT 185 669 173 Antisense
TTGCGCCTACTTGACGTTTTGCATT 249 699 201 Antisense
TTTTCACTGAGGAGCTTCGTGCCCA 432 673 236 Antisense
AGCTTCGTGCCCAGCAAGTTTTTAT 308 63 248 Antisense
GCTTTCCACTTCAGACAGCAGGTGC 310 303 284 Antisense
TTTGCATTTTCCGGTGTTCTTTCGA 243 669 373 Antisense
GAAGGTGAATCATCTTGCTATGGTT 437 335 453 Antisense
CATTGGACCTTACGTGTTCATCATA 280 217 564 Antisense
GCAGTCGAATCGTACTTTATTTTCA 624 311 604 Antisense
Sequence Source Affymetrix Proprietary Database