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[182363_at]

Description C43G2.3 /REP_DB=WormBase Gene ID /WP=CE08692 /TR=Q94173 /GB=AAB09109.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 25.4
(1.6)
A 		3.8
(-2.8)
A 		2.8
(-3)
A 		32.4
(3)
A 		30
B 24.5
(-0)
A 		5
(-3)
A 		44.2
(3)
A 		40.1
(2.4)
P 		39
C 8.8
(-2.5)
A 		34.4
(0.3)
A 		4.5
(-3)
A 		59.7
(3)
P 		55
avr 19.6
(-1.9) 		14.4
(-3) 		17.2
(-2.4) 		44.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 4.2
(-3)
A 		35.2
(-1.4)
A 		48.8
(-0.7)
A 		46.2
(-0.9)
A 		68
(0.2)
P 		122.7
(3)
P 		119
B 8.9
(-3)
A 		12.2
(-2.9)
A 		23.5
(-2.4)
A 		25.9
(-2.3)
A 		120.1
(1.8)
P 		146.5
(3)
P 		138
C 4.7
(-2.9)
A 		10.2
(-2.8)
A 		1.5
(-3)
A 		10.8
(-2.8)
A 		83.2
(-0.9)
P 		235.9
(3)
P 		234
avr 5.9
(-3) 		19.2
(-2.5) 		24.6
(-2.3) 		27.6
(-2.2) 		90.4
(0.1) 		168.4
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.3
(3)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		4.7
(-0.2)
A 		9
B 7.8
(1.4)
A 		1.2
(-3)
A 		10.2
(3)
A 		8.5
(1.9)
P 		9
C 2.9
(-2.1)
A 		9.9
(2.9)
A 		1.6
(-3)
A 		10.1
(3)
P 		9
avr 6.7
(1.3) 		4
(-3) 		4.2
(-2.7) 		7.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 0.8
(-3)
A 		12.5
(-0.6)
A 		10.6
(-1)
A 		11.7
(-0.8)
A 		20.5
(1.1)
P 		29.9
(3)
P 		29
B 3.1
(-3)
A 		4
(-2.9)
A 		5.7
(-2.7)
A 		6.9
(-2.6)
A 		48.8
(2.3)
P 		54.6
(3)
P 		52
C 1.7
(-2.9)
A 		3.1
(-2.8)
A 		0.4
(-3)
A 		2.2
(-2.9)
A 		26.9
(-1)
P 		79
(3)
P 		79
avr 1.9
(-3) 		6.5
(-2.5) 		5.6
(-2.6) 		6.9
(-2.4) 		32.1
(0.4) 		54.5
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11033
Sequence Type Exemplar sequence
Representative Public ID C43G2.3 NCBI
Target Description C43G2.3 /REP_DB=WormBase Gene ID /WP=CE08692 /TR=Q94173 /GB=AAB09109.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068601 NCBI Caenorhabditis elegans C43G2.3 (C43G2.3) mRNA, complete cds. 11/11 None
SNAP00000004606 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6578068:6579344:1 10/11 None
C43G2.3 ENSEMBL cdna:known chromosome:CEL140:IV:6578223:6579344:1 gene:C43G2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004614 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6578277-6579350(+) 99.64 99.64
Public Domain and Genome References
Gene Title
Ensembl C43G2.3
Entrez Gene 183418 Entrez gene
SwissProt Q94173 EMBL-EBI
WormBase CE36277 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09109 Hypothetical protein C43G2.3 [Caenorhabditis elegans] ref|NP_501002.2| C43G2.3 [Caenorhabditis elegans] 1.0E-118
blast CAE61512 Hypothetical protein CBG05411 [Caenorhabditis briggsae] 4.0E-26
blast CAE70982 Hypothetical protein CBG17802 [Caenorhabditis briggsae] 3.0E-22
blast CAE70982 Hypothetical protein CBG17802 [Caenorhabditis briggsae] 4.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000004606 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:182363_AT
gttctcgaatcatgtgcttttagctcttggtttgatcatttcagccgctcaatttctgaa
tgcagctgttacgatggaaatcaaaatgtttgatccaaatgggcaatgtaagaaatactt
ggaaaatggacaaaaatatctcgaaatcactcatgctcgtgttctggaacttggacctaa
aaatgggaataacttgagacagattgttggaaatcatctttgtcagggaaaatttgaaac
tggcacgtacaagtttaaatgtcaaagccaagttgattaccgttacaaagcggatacaat
gcaaatgggtcgattcatcagtttggataacttgaaagatcaaaagtttgatcccagcca
gcatattgctattgagaaaatcatcgtcaatggcctaagtaagaatataaatcaagattt
ccaaacttgcttcaaatcgtggcctaaagaattgattgctgatcatggtatctatgtttc
tgaaccactcggaggacaactaacccagtgggcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTCGAATCATGTGCTTTTAGCT 228 443 15 Antisense
CTTGGTTTGATCATTTCAGCCGCTC 697 217 40 Antisense
AGCCGCTCAATTTCTGAATGCAGCT 273 83 57 Antisense
GAATGCAGCTGTTACGATGGAAATC 441 331 72 Antisense
ATCTCGAAATCACTCATGCTCGTGT 103 33 152 Antisense
GCTCGTGTTCTGGAACTTGGACCTA 71 299 169 Antisense
AATGGGTCGATTCATCAGTTTGGAT 484 163 318 Antisense
AAGTTTGATCCCAGCCAGCATATTG 674 155 358 Antisense
AACTTGCTTCAAATCGTGGCCTAAA 37 137 438 Antisense
GTATCTATGTTTCTGAACCACTCGG 286 453 482 Antisense
GAGGACAACTAACCCAGTGGGCACG 670 401 506 Antisense
Sequence Source Affymetrix Proprietary Database