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[182362_at]

Description F13A2.5 /REP_DB=WormBase Gene ID /WP=CE09367 /TR=O16892 /GB=AAB69899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 34.5
(-2.4)
A 		40
(3)
A 		33.9
(-3)
A 		40
(3)
A 		6
B 38.4
(0.5)
A 		42.2
(1.8)
A 		28.4
(-3)
A 		45.7
(3)
A 		17
C 32
(0.4)
A 		45.5
(2.1)
A 		5.9
(-3)
A 		52.4
(3)
P 		47
avr 35
(0.2) 		42.6
(2.1) 		22.7
(-3) 		46
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 35.5
(2.1)
A 		32.8
(1.6)
A 		34.7
(2)
P 		39.1
(2.9)
A 		11.2
(-3)
A 		39.6
(3)
A 		28
B 35.9
(3)
A 		26.3
(-1.2)
A 		24.7
(-1.9)
A 		29.4
(0.2)
A 		24.5
(-2)
A 		22.2
(-3)
P 		14
C 41.5
(3)
A 		15
(-3)
A 		23.1
(-1.2)
A 		34
(1.3)
A 		22.6
(-1.3)
A 		36.8
(1.9)
A 		27
avr 37.6
(3) 		24.7
(-1.3) 		27.5
(-0.3) 		34.2
(1.9) 		19.4
(-3) 		32.9
(1.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.6
(3)
A 		8.7
(-0.5)
A 		8.9
(-0.3)
A 		5.9
(-3)
A 		7
B 12.2
(3)
A 		10.4
(1.1)
A 		6.6
(-3)
A 		9.7
(0.3)
A 		6
C 10.6
(1.6)
A 		13.1
(3)
A 		2
(-3)
A 		8.8
(0.7)
P 		11
avr 11.8
(3) 		10.7
(1.9) 		5.8
(-3) 		8.1
(-0.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.6
(-0.7)
A 		11.7
(3)
A 		7.5
(-0)
P 		9.9
(1.7)
A 		3.4
(-3)
A 		9.6
(1.5)
A 		8
B 12.5
(3)
A 		8.7
(-0.5)
A 		6
(-3)
A 		7.8
(-1.3)
A 		10
(0.7)
A 		8.3
(-0.9)
P 		7
C 15.4
(3)
A 		4.6
(-3)
A 		5.9
(-2.3)
A 		6.8
(-1.8)
A 		7.3
(-1.5)
A 		12.3
(1.3)
A 		11
avr 11.5
(3) 		8.3
(-0.8) 		6.5
(-3) 		8.2
(-1) 		6.9
(-2.5) 		10.1
(1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15349
Sequence Type Exemplar sequence
Representative Public ID F13A2.5 NCBI
Target Description F13A2.5 /REP_DB=WormBase Gene ID /WP=CE09367 /TR=O16892 /GB=AAB69899.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071810 NCBI Caenorhabditis elegans F13A2.5 (F13A2.5) mRNA, complete cds. 11/11 None
SNAP00000037900 ENSEMBL cdna:SNAP chromosome:CEL140:V:4401112:4401754:-1 9/11 None
GENEFINDER00000037906 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4401112:4401754:-1 9/11 None
F13A2.5 ENSEMBL cdna:known chromosome:CEL140:V:4401112:4401829:-1 gene:F13A2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4401111-4401829(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A2.5
Entrez Gene 184396 Entrez gene
SwissProt O16892 EMBL-EBI
WormBase CE09367 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69899 Hypothetical protein F13A2.5 [Caenorhabditis elegans] ref|NP_504211.1| F13A2.5 [Caenorhabditis elegans] 1.0E-95
blast AAB69899 Hypothetical protein F13A2.5 [Caenorhabditis elegans] ref|NP_504211.1| F13A2.5 [Caenorhabditis elegans] 3.0E-79
blast CAE56047 Hypothetical protein CBG23613 [Caenorhabditis briggsae] 3.0E-10
blast CAE56047 Hypothetical protein CBG23613 [Caenorhabditis briggsae] 4.0E-10
Sequence
Target Sequence 
>C. ELEGANS:182362_AT
cacatatttttcttgctttatcgcacaatggcttcaaattcggaatttaccttcgatatg
agaaaggttaaattcgagcatgttgaatattcttctaatcacctagtttttgagaaaact
tctcccatctccgtttgtcattatgaagatgtcatgatgacccttgaaagcgaaatggaa
gggctggatggttacatcgcatccctgtcccccgaagaacaaatttgggtcaaagaagat
gctcttcaaaatgagcagcttgtgaaggaagcagttccgtggatgcgcaaggaagaagct
caggcgaccacgaagtatcgccaaatgttgattgctcagaagaagaaagcgatcaataaa
ttgcacgggcatggagccgtagttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATATTTTTCTTGCTTTATCGCA 200 197 61 Antisense
GCTTTATCGCACAATGGCTTCAAAT 701 303 75 Antisense
GAATATTCTTCTAATCACCTAGTTT 257 325 145 Antisense
TTGAGAAAACTTCTCCCATCTCCGT 663 703 170 Antisense
TCCCATCTCCGTTTGTCATTATGAA 654 597 183 Antisense
TGTCATGATGACCCTTGAAAGCGAA 699 557 210 Antisense
TGGATGGTTACATCGCATCCCTGTC 97 551 245 Antisense
GAAGCAGTTCCGTGGATGCGCAAGG 400 341 328 Antisense
GAAGCTCAGGCGACCACGAAGTATC 3 343 355 Antisense
GTATCGCCAAATGTTGATTGCTCAG 190 455 375 Antisense
GCACGGGCATGGAGCCGTAGTTCGC 709 261 423 Antisense
Sequence Source Affymetrix Proprietary Database