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[182361_s_at]

Description C05D9.7 /REP_DB=WormBase Gene ID /WP=CE07933 /TR=Q9GYK1 /GB=AAF98600.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 40      6grp_total > 07      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 915
1 2 3 4 range
A 899.5
(1.6)
P 		1112
(3)
P 		572.8
(-0.5)
P 		197.1
(-3)
P 		915
B 1036.3
(2.7)
P 		1071.6
(3)
P 		764.5
(0.5)
P 		348.6
(-3)
P 		723
C 1006.1
(2.9)
P 		1019.4
(3)
P 		647.9
(-0.1)
P 		296.8
(-3)
P 		723
avr 980.6
(2.3) 		1067.7
(3) 		661.7
(-0.1) 		280.8
(-3) 		787

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 932.3
(3)
P 		745.9
(0.6)
P 		607.8
(-1.2)
P 		643.5
(-0.7)
P 		464.3
(-3)
P 		508.9
(-2.4)
P 		468
B 960.8
(3)
P 		655.5
(-1.2)
P 		685.7
(-0.8)
P 		567.4
(-2.4)
P 		528.7
(-2.9)
P 		524.4
(-3)
P 		436
C 810.5
(3)
P 		695.8
(1.4)
P 		604
(0.2)
P 		657.4
(0.9)
P 		368.6
(-3)
P 		580.7
(-0.1)
P 		442
avr 901.2
(3) 		699.1
(0.3) 		632.5
(-0.6) 		622.8
(-0.7) 		453.9
(-3) 		538
(-1.9) 		447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 327.5
(3)
P 		241.4
(1.3)
P 		149.7
(-0.6)
P 		28.9
(-3)
P 		299
B 330.5
(3)
P 		264.7
(1.5)
P 		177.2
(-0.6)
P 		74.3
(-3)
P 		256
C 333.1
(3)
P 		293.1
(2.2)
P 		225.8
(0.7)
P 		50
(-3)
P 		283
avr 330.4
(3) 		266.4
(1.6) 		184.2
(-0.1) 		51.1
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 171.9
(-1)
P 		265.3
(3)
P 		132.4
(-2.6)
P 		163.2
(-1.3)
P 		140.1
(-2.3)
P 		123.9
(-3)
P 		141
B 334.3
(3)
P 		218.2
(-0.8)
P 		166.5
(-2.5)
P 		150.3
(-3)
P 		214.8
(-0.9)
P 		195.5
(-1.5)
P 		184
C 300.4
(3)
P 		212.3
(0.1)
P 		153.7
(-1.9)
P 		132.2
(-2.6)
P 		119.3
(-3)
P 		194.4
(-0.5)
P 		181
avr 268.9
(3) 		231.9
(1.2) 		150.9
(-2.9) 		148.6
(-3) 		158.1
(-2.5) 		171.3
(-1.9) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182361_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18203
Sequence Type Exemplar sequence
Representative Public ID C05D9.7 NCBI
Target Description C05D9.7 /REP_DB=WormBase Gene ID /WP=CE07933 /TR=Q9GYK1 /GB=AAF98600.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075812 NCBI Caenorhabditis elegans C05D9.7 (C05D9.7) mRNA, complete cds. 11/11 None
SNAP00000015513 ENSEMBL cdna:SNAP chromosome:CEL140:X:1117344:1119394:-1 11/11 None
GENEFINDER00000015523 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1117344:1119394:-1 11/11 None
C05D9.7 ENSEMBL cdna:known chromosome:CEL140:X:1117240:1119404:-1 gene:C05D9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1117343-1119394(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D9.7
Entrez Gene 180465 Entrez gene
SwissProt Q9GYK1 EMBL-EBI
WormBase CE07933 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98600 Hypothetical protein C05D9.7 [Caenorhabditis elegans] ref|NP_508213.1| C05D9.7 [Caenorhabditis elegans] 1.0E-143
blast CAE60515 Hypothetical protein CBG04134 [Caenorhabditis briggsae] 1.0E-109
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508213.1 4 73-95,100-122,134-156,188-210
C05D9.7 4 73-95,100-122,134-156,188-210
SNAP00000015513 4 73-95,100-122,134-156,188-210
GENEFINDER00000015523 4 73-95,100-122,134-156,188-210
Sequence
Target Sequence 
>C. ELEGANS:182361_S_AT
attgtatttccttcatctactgtgcccttgccattattgtgattgctttcaatgccttta
tgtattacaatgggatcagaaacaagtttatcctatacgtctcggcagtaatgggtggaa
ttgtgctgacaagtctcatgatgcacattggtatcatccgccagcagccatttttctgca
ttccattcgttgttttaagaactcttgaaacatttgtcagtgccgtcttcttgacggctt
ttacctatgcgcttatcaagccggaaagtgagctcttcatgtttttcctgcagtgcacaa
aaatgggtgcacaacttgtttctacacatttcaagctggatttggtagatgccacgttcc
aattgtgcattgtcggctggtgcctctcactaacattcctctcagtctccgtctacgtct
gccgtgtggcattccactgcacaatgtcaatcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTATTTCCTTCATCTACTGTGC 261 3 224 Antisense
TACTGTGCCCTTGCCATTATTGTGA 1 647 241 Antisense
ACAAGTTTATCCTATACGTCTCGGC 123 113 305 Antisense
GATGCACATTGGTATCATCCGCCAG 440 413 363 Antisense
CATTTTTCTGCATTCCATTCGTTGT 317 215 392 Antisense
GAAACATTTGTCAGTGCCGTCTTCT 361 355 430 Antisense
TTCTTGACGGCTTTTACCTATGCGC 353 677 451 Antisense
CTTCATGTTTTTCCTGCAGTGCACA 531 221 498 Antisense
GTAGATGCCACGTTCCAATTGTGCA 271 457 568 Antisense
AATTGTGCATTGTCGGCTGGTGCCT 121 179 584 Antisense
ATTCCACTGCACAATGTCAATCGCT 676 7 654 Antisense
Sequence Source Affymetrix Proprietary Database