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[182360_at]

Description C06A12.5 /REP_DB=WormBase Gene ID /WP=CE18489 /TR=Q9XU43 /GB=CAB06039.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 92      6grp_highest_nonorm > 91      6grp_total > 94      4grp_total > 20      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 170
(-0.5)
P 		149.9
(-0.9)
P 		48.6
(-3)
A 		342.6
(3)
P 		294
B 189.7
(0.1)
P 		128.6
(-1.1)
A 		32.1
(-3)
A 		340.3
(3)
P 		308
C 173.3
(-0.8)
P 		119.3
(-1.9)
P 		59.5
(-3)
A 		372.2
(3)
P 		313
avr 177.7
(-0.4) 		132.6
(-1.3) 		46.7
(-3) 		351.7
(3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 152.7
(-2.4)
P 		122.4
(-3)
P 		165.3
(-2.2)
P 		226.6
(-1.1)
P 		450.8
(3)
P 		223.8
(-1.1)
P 		328
B 113.7
(-3)
P 		120.3
(-2.9)
P 		196
(-1.4)
P 		253.1
(-0.3)
P 		428.6
(3)
P 		253.5
(-0.3)
P 		315
C 106.5
(-3)
P 		121.3
(-2.6)
P 		188.9
(-0.9)
P 		283.3
(1.5)
P 		344.4
(3)
P 		277.6
(1.3)
P 		238
avr 124.3
(-2.9) 		121.3
(-3) 		183.4
(-1.7) 		254.3
(-0.2) 		407.9
(3) 		251.6
(-0.3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 61.9
(3)
P 		32.5
(-0.6)
P 		12.7
(-3)
A 		50.2
(1.6)
P 		49
B 60.5
(1.9)
P 		31.8
(-0.8)
A 		7.4
(-3)
A 		72.5
(3)
P 		65
C 57.4
(2.2)
P 		34.3
(-1.1)
P 		20.7
(-3)
A 		62.8
(3)
P 		42
avr 59.9
(2.8) 		32.9
(-0.6) 		13.6
(-3) 		61.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 28.1
(-3)
P 		43.5
(-2.1)
P 		36
(-2.6)
P 		57.5
(-1.4)
P 		136
(3)
P 		54.5
(-1.5)
P 		108
B 39.6
(-3)
P 		40.1
(-3)
P 		47.6
(-2.6)
P 		67
(-1.8)
P 		174.1
(3)
P 		94.5
(-0.6)
P 		135
C 39.5
(-2.8)
P 		37
(-3)
P 		48.1
(-2.1)
P 		57
(-1.4)
P 		111.4
(3)
P 		92.9
(1.5)
P 		74
avr 35.7
(-3) 		40.2
(-2.7) 		43.9
(-2.5) 		60.5
(-1.6) 		140.5
(3) 		80.6
(-0.4) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10350
Sequence Type Exemplar sequence
Representative Public ID C06A12.5 NCBI
Target Description C06A12.5 /REP_DB=WormBase Gene ID /WP=CE18489 /TR=Q9XU43 /GB=CAB06039.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070708 NCBI Caenorhabditis elegans C06A12.5 (C06A12.5) mRNA, complete cds. 11/11 None
SNAP00000012313 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17429755:17431332:-1 11/11 None
GENEFINDER00000012316 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17429755:17431332:-1 11/11 None
C06A12.5 ENSEMBL cdna:known chromosome:CEL140:IV:17429711:17431923:-1 gene:C06A12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17429760-17431338(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A12.5
Entrez Gene 182288 Entrez gene
SwissProt Q9XU43 EMBL-EBI
WormBase CE18489 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB06039 Hypothetical protein C06A12.5 [Caenorhabditis elegans] ref|NP_503109.1| C06A12.5 [Caenorhabditis elegans] 0.0
blast CAE57450 Hypothetical protein CBG00413 [Caenorhabditis briggsae] 0.0
blast CAA88435 Hypothetical protein ZK945.1 [Caenorhabditis elegans] ref|NP_496176.1| ZK945.1 [Caenorhabditis elegans] sp|Q09621|YS81_CAEEL Hypothetical protein ZK945.1 in chromosome II 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 2.2E-71
Pfam IPR001466 EMBL-EBI Beta-lactamase 5.9E-69
Sequence
Target Sequence 
>C. ELEGANS:182360_AT
gatctcgacattcaaatcggtgcccaaaaatcagaggctccatatctcgctcgtctcaca
acaccgtctttatgggaattcacgcgtgatataataaaggacccaaaaattcttattatg
cttggacttatgtatatccgctttgatacacttgttcataaaatgagatcaaatccagat
tggctactcgttaattacgatactatggtattaaacgatcccgagattgtttctctaaat
cttcccgctgtaaccgctattggaaatgtgagagatgtttcaaggttgttatcaatgatc
gttgaaaaggagctaatatcaaataccacactcctcgaactttcccggcctacgttaaac
agctggcatttcgaaaaagtaactatctggccggttatcaaagggcatgggttcttctat
gaaaaacacccattgatacctgaagccttcacatttggccatccaggttacggtggacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCGACATTCAAATCGGTGCCC 233 419 691 Antisense
AAATCAGAGGCTCCATATCTCGCTC 622 117 718 Antisense
TCGTCTCACAACACCGTCTTTATGG 633 601 741 Antisense
ATCCGCTTTGATACACTTGTTCATA 197 39 826 Antisense
AATCCAGATTGGCTACTCGTTAATT 168 167 862 Antisense
CTTCCCGCTGTAACCGCTATTGGAA 405 219 931 Antisense
AATATCAAATACCACACTCCTCGAA 139 173 1005 Antisense
TCCCGGCCTACGTTAAACAGCTGGC 674 595 1033 Antisense
ACACCCATTGATACCTGAAGCCTTC 405 109 1116 Antisense
TGAAGCCTTCACATTTGGCCATCCA 235 575 1131 Antisense
TGGCCATCCAGGTTACGGTGGACAG 693 541 1146 Antisense
Sequence Source Affymetrix Proprietary Database