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[182359_at]

Description T21C12.4 /REP_DB=WormBase Gene ID /WP=CE02349 /TR=Q22635 /GB=CAA90317.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 28.3
(-3)
A 		45.8
(3)
A 		37.9
(0.3)
A 		36.2
(-0.3)
A 		18
B 68.8
(3)
A 		18.3
(-2.7)
A 		20.1
(-2.5)
A 		15.3
(-3)
A 		54
C 65.6
(3)
A 		54
(1.6)
A 		14.4
(-3)
A 		23
(-2)
A 		51
avr 54.2
(3) 		39.4
(0) 		24.1
(-3) 		24.8
(-2.9) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 30.7
(-1.8)
A 		67.5
(3)
A 		61.5
(2.2)
A 		21.5
(-3)
A 		60.1
(2)
A 		32.5
(-1.6)
A 		46
B 101.4
(3)
A 		49.7
(-0.6)
A 		16.3
(-3)
A 		77.4
(1.3)
A 		66.2
(0.5)
A 		59.4
(0)
A 		85
C 85.7
(3)
A 		33.2
(-1.5)
A 		28.5
(-1.9)
A 		15.7
(-3)
A 		71
(1.7)
A 		43.3
(-0.6)
A 		70
avr 72.6
(3) 		50.1
(-0.6) 		35.4
(-3) 		38.2
(-2.5) 		65.8
(1.9) 		45.1
(-1.4) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.3
(3)
A 		9.9
(2.5)
A 		9.9
(2.5)
A 		5.3
(-3)
A 		5
B 21.9
(3)
A 		4.5
(-2.6)
A 		4.7
(-2.5)
A 		3.3
(-3)
A 		19
C 21.7
(3)
A 		15.5
(0.9)
A 		5
(-2.6)
A 		3.9
(-3)
A 		18
avr 18
(3) 		10
(-0.5) 		6.5
(-2) 		4.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5.7
(-2.9)
A 		24
(3)
A 		13.4
(-0.4)
A 		5.5
(-3)
A 		18.1
(1.1)
A 		7.9
(-2.2)
A 		19
B 35.3
(3)
A 		16.5
(-0.6)
A 		4
(-3)
A 		20.5
(0.2)
A 		26.9
(1.4)
A 		22.2
(0.5)
A 		31
C 31.8
(3)
A 		10.1
(-1.6)
A 		7.3
(-2.1)
A 		3.2
(-3)
A 		23
(1.2)
A 		14.5
(-0.6)
A 		29
avr 24.3
(3) 		16.9
(0.2) 		8.2
(-3) 		9.7
(-2.4) 		22.7
(2.4) 		14.9
(-0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7719
Sequence Type Exemplar sequence
Representative Public ID T21C12.4 NCBI
Target Description T21C12.4 /REP_DB=WormBase Gene ID /WP=CE02349 /TR=Q22635 /GB=CAA90317.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066925, NM_001027619
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038810 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10551056:10554047:-1 10/11 None
SNAP00000038803 ENSEMBL cdna:SNAP chromosome:CEL140:III:10551701:10554047:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066925 2/11 Cross Hyb Matching Probes None
NM_001027619 4/11 Cross Hyb Matching Probes None
T21C12.8 4/11 Cross Hyb Matching Probes None
T21C12.4 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10551775-10554043(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90317 Hypothetical protein T21C12.4 [Caenorhabditis elegans] ref|NP_499326.2| T21C12.4 [Caenorhabditis elegans] 1.0E-49
blast CAE71448 Hypothetical protein CBG18360 [Caenorhabditis briggsae] 4.0E-44
blast CAE71448 Hypothetical protein CBG18360 [Caenorhabditis briggsae] 6.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038810 2 294-313,356-378
SNAP00000038803 1 294-316
Sequence
Target Sequence 
>C. ELEGANS:182359_AT
gcagaaaagatccgaagccgctccactcgaaaattcggaagggaaatcgacaaaatctcg
gaaattgtcgagcccatcgaaaaagtcgaacaagaagtcgatatcgaaaaaatcggatcg
ctcgaaggtgtcgaaagtcaaaagaagtcccaaaacagataaggaactggagaagaaacc
ttcatcgatttatgagaggaaagacgtggacggatctccgccgtcttctgtcctacgaga
ggctcatccacagcgccgaactgtttcgccataattggtgtgtggagacggaggaaaaag
agaagcgtctcaaaattgatgtgaaaaatcggcttttcgatacctcaatcgatggaaata
ttgacgaaaaaggggcagctcttcccaaatctcataacacgacaaattccgatggagatc
cgggcagtgaacaagaatatcttggtctgttgccacgtgacaagttggccgcgttccaca
accccattcgtatgagaatttggctttattttgctcatctgcacttctctcatcgtctgg
ttgattttgctagtggagatgacgtcctatgcgacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGAAAAGATCCGAAGCCGCTCCA 377 313 269 Antisense
AAGCCGCTCCACTCGAAAATTCGGA 425 147 283 Antisense
GAAAGACGTGGACGGATCTCCGCCG 172 359 467 Antisense
TTCTGTCCTACGAGAGGCTCATCCA 569 693 494 Antisense
AGCGCCGAACTGTTTCGCCATAATT 541 81 520 Antisense
AAAAGGGGCAGCTCTTCCCAAATCT 328 131 636 Antisense
ATATCTTGGTCTGTTGCCACGTGAC 607 19 705 Antisense
GCCACGTGACAAGTTGGCCGCGTTC 544 277 720 Antisense
TTCCACAACCCCATTCGTATGAGAA 699 695 742 Antisense
GGCTTTATTTTGCTCATCTGCACTT 506 537 770 Antisense
GTGGAGATGACGTCCTATGCGACAG 301 491 821 Antisense
Sequence Source Affymetrix Proprietary Database