[Home] | [Total List]

[182358_at]

Description F13A2.1 /REP_DB=WormBase Gene ID /WP=CE09363 /TR=O16896 /GB=AAB69895.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 1
(-3)
A 		17
(-1.1)
A 		4.4
(-2.6)
A 		50.7
(3)
A 		50
B 8.6
(-0.9)
A 		2.4
(-3)
A 		4.7
(-2.2)
A 		19.8
(3)
A 		17
C 2.4
(-3)
A 		57.7
(3)
A 		4
(-2.8)
A 		33.7
(0.4)
A 		55
avr 4
(-3) 		25.7
(1.2) 		4.4
(-2.9) 		34.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.6
(-3)
A 		7.3
(-1)
A 		16.8
(3)
A 		4.4
(-2.2)
A 		4.1
(-2.4)
A 		5.4
(-1.8)
A 		14
B 2
(-2.9)
A 		9.6
(-1.1)
A 		7.7
(-1.5)
A 		27.1
(3)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		26
C 1.6
(-3)
A 		5.3
(-2.1)
A 		9.8
(-1.1)
A 		27.3
(3)
A 		1.9
(-2.9)
A 		3.4
(-2.6)
A 		26
avr 2.1
(-3) 		7.4
(-1.2) 		11.4
(0.2) 		19.6
(3) 		2.6
(-2.8) 		3.4
(-2.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.4
(-3)
A 		3.7
(-0.2)
A 		1.2
(-2.3)
A 		7.4
(3)
A 		7
B 2.7
(0.5)
A 		0.6
(-3)
A 		1.1
(-2.2)
A 		4.2
(3)
A 		4
C 0.8
(-3)
A 		16.6
(3)
A 		1.4
(-2.8)
A 		5.7
(-1.1)
A 		16
avr 1.3
(-2.9) 		7
(3) 		1.2
(-3) 		5.8
(1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.6
(0.9)
A 		3.7
(3)
A 		1.1
(-1.9)
A 		1.2
(-1.7)
A 		1.3
(-1.5)
A 		3
B 0.7
(-2.8)
A 		3.2
(-0.6)
A 		1.9
(-1.7)
A 		7.2
(3)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		7
C 0.6
(-3)
A 		1.6
(-1.8)
A 		2.5
(-0.7)
A 		5.5
(3)
A 		0.6
(-3)
A 		1.1
(-2.4)
A 		5
avr 0.6
(-3) 		2.5
(-0.2) 		2.7
(0.2) 		4.6
(3) 		0.8
(-2.7) 		1
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15319
Sequence Type Exemplar sequence
Representative Public ID F13A2.1 NCBI
Target Description F13A2.1 /REP_DB=WormBase Gene ID /WP=CE09363 /TR=O16896 /GB=AAB69895.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071806 NCBI Caenorhabditis elegans F13A2.1 (F13A2.1) mRNA, complete cds. 11/11 None
F13A2.1 ENSEMBL cdna:known chromosome:CEL140:V:4380572:4382196:-1 gene:F13A2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037896 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037904 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037905 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4380571-4382196(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A2.1
Entrez Gene 184392 Entrez gene
SwissProt O16896 EMBL-EBI
WormBase CE09363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69895 Hypothetical protein F13A2.1 [Caenorhabditis elegans] ref|NP_504207.1| F13A2.1 [Caenorhabditis elegans] 1.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504207.1 1 13-35
F13A2.1 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:182358_AT
tggactttggatcttattccttgttattttgggcatggtattgaatggaacaccgtttcc
agatattctgcgccattttcatgtcagtgatttcagcaaggagctcgccgagttagaaat
taaacaagacgcagagtttcgcaagaaatcactttggcagaatcttgagacgttcgcgat
ggacttttcagacggaccggagatggaaaatgatttggaaaagagtctcttggaaaatgg
aactgagacggcaggttctgagccaatcactgaccaggaaatgatagaaaaagaggagct
cgctagatttcttgctctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACTTTGGATCTTATTCCTTGTT 595 547 63 Antisense
TATTCCTTGTTATTTTGGGCATGGT 453 663 77 Antisense
ACACCGTTTCCAGATATTCTGCGCC 532 109 112 Antisense
ATTCTGCGCCATTTTCATGTCAGTG 299 11 127 Antisense
GATTTCAGCAAGGAGCTCGCCGAGT 177 429 151 Antisense
GTTTCGCAAGAAATCACTTTGGCAG 310 451 198 Antisense
GGCAGAATCTTGAGACGTTCGCGAT 700 535 218 Antisense
GTTCGCGATGGACTTTTCAGACGGA 188 443 234 Antisense
GGAACTGAGACGGCAGGTTCTGAGC 29 531 301 Antisense
GGTTCTGAGCCAATCACTGACCAGG 231 507 316 Antisense
GAGCTCGCTAGATTTCTTGCTCTGC 489 387 358 Antisense
Sequence Source Affymetrix Proprietary Database