[Home] | [Total List]

[182357_at]

Description Y43F8C.2 /REP_DB=WormBase Gene ID /WP=CE21900 /TR=Q9XWN4 /GB=CAA21617.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 36      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_total > 27      4grp_total > 48      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 386.4
(-2.7)
P 		509.7
(-0.5)
P 		709.3
(3)
P 		370.4
(-3)
P 		339
B 372.8
(-3)
P 		528.6
(3)
P 		487
(1.4)
P 		471.3
(0.8)
P 		156
C 268.1
(-3)
P 		466.6
(0.1)
P 		655.8
(3)
P 		404.8
(-0.9)
P 		388
avr 342.4
(-3) 		501.6
(0.5) 		617.4
(3) 		415.5
(-1.4) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 211.2
(3)
P 		184.6
(1.3)
P 		143.6
(-1.3)
P 		159.3
(-0.3)
P 		117.9
(-3)
P 		199
(2.2)
P 		93
B 446.7
(2.6)
P 		471.2
(3)
P 		140.8
(-2)
P 		76
(-3)
A 		219.9
(-0.8)
P 		321.1
(0.7)
P 		395
C 482
(3)
P 		332.1
(0.6)
P 		211.9
(-1.3)
P 		107.9
(-3)
P 		112.4
(-2.9)
P 		266.9
(-0.4)
P 		374
avr 380
(3) 		329.3
(1.9) 		165.4
(-1.8) 		114.4
(-3) 		150.1
(-2.2) 		262.3
(0.3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 140.7
(1)
P 		110.6
(-0.4)
P 		185.4
(3)
P 		54.2
(-3)
P 		131
B 118.9
(0.7)
P 		130.5
(3)
P 		112.8
(-0.5)
P 		100.4
(-3)
P 		30
C 88.7
(-2.2)
P 		134.2
(-0.5)
P 		228.6
(3)
P 		68.3
(-3)
P 		160
avr 116.1
(-0.5) 		125.1
(0) 		175.6
(3) 		74.3
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 38.9
(-1.7)
P 		65.7
(3)
P 		31.3
(-3)
P 		40.4
(-1.4)
P 		35.6
(-2.3)
P 		48.4
(-0)
P 		34
B 155.4
(2.9)
P 		156.8
(3)
P 		34.2
(-2.4)
P 		20.1
(-3)
A 		89.4
(0)
P 		119.7
(1.4)
P 		137
C 178.7
(3)
P 		101.3
(0)
P 		53.9
(-1.8)
P 		21.7
(-3)
P 		36.4
(-2.4)
P 		89.4
(-0.4)
P 		157
avr 124.3
(3) 		107.9
(2) 		39.8
(-2.2) 		27.4
(-3) 		53.8
(-1.4) 		85.8
(0.6) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12977
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.2 NCBI
Target Description Y43F8C.2 /REP_DB=WormBase Gene ID /WP=CE21900 /TR=Q9XWN4 /GB=CAA21617.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075401 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-26) (nlp-26) mRNA, complete cds. 11/11 None
SNAP00000039607 ENSEMBL cdna:SNAP chromosome:CEL140:V:19611522:19617060:1 11/11 None
GENEFINDER00000039631 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19612735:19617211:1 11/11 None
Y43F8C.2.1 ENSEMBL cdna:known chromosome:CEL140:V:19616098:19617253:1 gene:Y43F8C.2 11/11 None
Y43F8C.2.2 ENSEMBL cdna:known chromosome:CEL140:V:19616100:19617253:1 gene:Y43F8C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19616103-19617060(+) 97.8 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nlp-26
Ensembl Y43F8C.2
Entrez Gene 180281 Entrez gene
SwissProt Q9XWN4 EMBL-EBI
WormBase CE21900 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000039607 2 7-29,190-212
GENEFINDER00000039631 1 299-321
Sequence
Target Sequence 
>C. ELEGANS:182357_AT
cttgtatccgcacaattcggctttggaggccagcaatcgttcggtggacgcggcggacaa
ttcgggggaatgcaaagaggaggattcaatggaaaccgcggaggattcggccagcaatct
cagttcggaggccgtggaggtaaccaattcggcggccgcgggggaagccaattcaatgga
agaggtggaaaccaattcggagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTATCCGCACAATTCGGCTTTG 687 215 52 Antisense
GCACAATTCGGCTTTGGAGGCCAGC 267 315 61 Antisense
GCTTTGGAGGCCAGCAATCGTTCGG 34 303 71 Antisense
GTTCGGTGGACGCGGCGGACAATTC 648 301 90 Antisense
GCGGCGGACAATTCGGGGGAATGCA 246 293 101 Antisense
TCGGCCAGCAATCTCAGTTCGGAGG 422 607 158 Antisense
GCAATCTCAGTTCGGAGGCCGTGGA 588 321 165 Antisense
GGAGGCCGTGGAGGTAACCAATTCG 585 507 178 Antisense
GCCGTGGAGGTAACCAATTCGGCGG 535 279 182 Antisense
GGCCGCGGGGGAAGCCAATTCAATG 527 541 205 Antisense
GAAGAGGTGGAAACCAATTCGGAGG 629 331 230 Antisense
Sequence Source Affymetrix Proprietary Database