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[182356_at]

Description T06A1.4 /REP_DB=WormBase Gene ID /WP=CE18208 /TR=O61928 /GB=AAC17771.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 33.4
(-0.3)
M 		35.1
(0.1)
A 		21
(-3)
A 		48.5
(3)
A 		28
B 22.6
(0.3)
A 		8.6
(-3)
A 		18.5
(-0.6)
A 		33.8
(3)
A 		25
C 38.9
(-0.2)
A 		32.7
(-1)
A 		17
(-3)
P 		63.7
(3)
A 		47
avr 31.6
(-0.4) 		25.5
(-1.7) 		18.8
(-3) 		48.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 46.7
(2.8)
A 		10.5
(-2.3)
A 		47.9
(3)
A 		18.2
(-1.2)
A 		21.2
(-0.8)
A 		5.2
(-3)
A 		43
B 47.2
(3)
A 		21.9
(-0.3)
A 		46.9
(3)
A 		31.4
(0.9)
A 		16.3
(-1)
A 		1.3
(-3)
A 		46
C 35.5
(3)
P 		9.2
(-1.6)
A 		6.8
(-2)
A 		2.1
(-2.9)
A 		16
(-0.4)
A 		1.3
(-3)
A 		34
avr 43.1
(3) 		13.9
(-1.3) 		33.9
(1.6) 		17.2
(-0.8) 		17.8
(-0.7) 		2.6
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.2
(3)
M 		7.6
(-1.1)
A 		5.5
(-3)
A 		7.1
(-1.6)
A 		7
B 7.2
(3)
A 		2.1
(-3)
A 		4.3
(-0.4)
A 		7.2
(3)
A 		5
C 12.9
(3)
A 		9.4
(0)
A 		5.9
(-3)
P 		10.7
(1.1)
A 		7
avr 10.8
(3) 		6.4
(-1.7) 		5.2
(-3) 		8.3
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.6
(1.8)
A 		3.7
(-1.4)
A 		10.4
(3)
A 		4.6
(-0.8)
A 		6.4
(0.4)
A 		1.3
(-3)
A 		9
B 16.4
(3)
A 		7.3
(-0.4)
A 		11.4
(1.1)
A 		8.3
(-0.1)
A 		6.6
(-0.7)
A 		0.5
(-3)
A 		16
C 13.1
(3)
P 		2.8
(-1.9)
A 		1.7
(-2.4)
A 		0.4
(-3)
A 		5.2
(-0.7)
A 		0.4
(-3)
A 		13
avr 12.7
(3) 		4.6
(-1.1) 		7.8
(0.6) 		4.4
(-1.2) 		6.1
(-0.3) 		0.7
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15900
Sequence Type Exemplar sequence
Representative Public ID T06A1.4 NCBI
Target Description T06A1.4 /REP_DB=WormBase Gene ID /WP=CE18208 /TR=O61928 /GB=AAC17771.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071134 NCBI Caenorhabditis elegans T06A1.4 (T06A1.4) mRNA, complete cds. 11/11 None
T06A1.4 ENSEMBL cdna:known chromosome:CEL140:V:1944784:1946788:1 gene:T06A1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1944783-1945328(+) 55.56 55.56
Public Domain and Genome References
Gene Title
Ensembl T06A1.4
Entrez Gene 188156 Entrez gene
SwissProt O61928 EMBL-EBI
WormBase CE18208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503535 T06A1.4 [Caenorhabditis elegans] gb|AAC17771.1| Hypothetical protein T06A1.4 [Caenorhabditis elegans] 2.0E-58
blast CAE74615 Hypothetical protein CBG22405 [Caenorhabditis briggsae] emb|CAE56951.1| Hypothetical protein CBG24801 [Caenorhabditis briggsae] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:182356_AT
atggcggtgttcaaaaagctgcgtaagaacaaggacaaaaacttgccattgcctgaacca
gaagccgtgaaaccgttggacaagaggattggaattgattcatacagagacttcttcact
ctcaaaaattggtggaaatcggtagatcgaaaacgtgtggaagcttctacgtacatgttc
agcaaacatttttccgtaaaaaaacttgatagtttgaactcggaaattgacctaaaaatc
gattattcaaaattaatcacaacttttctctacggaaatatgcctgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGTGTTCAAAAAGCTGCGTA 486 51 13 Antisense
AAAGCTGCGTAAGAACAAGGACAAA 620 123 27 Antisense
AAAACTTGCCATTGCCTGAACCAGA 280 131 50 Antisense
CCTGAACCAGAAGCCGTGAAACCGT 46 261 64 Antisense
GAAGCCGTGAAACCGTTGGACAAGA 179 343 73 Antisense
TCATACAGAGACTTCTTCACTCTCA 200 621 112 Antisense
CGTGTGGAAGCTTCTACGTACATGT 125 245 166 Antisense
GCTTCTACGTACATGTTCAGCAAAC 507 305 175 Antisense
GATAGTTTGAACTCGGAAATTGACC 219 413 220 Antisense
AATTAATCACAACTTTTCTCTACGG 684 173 263 Antisense
TTCTCTACGGAAATATGCCTGACAA 678 689 278 Antisense
Sequence Source Affymetrix Proprietary Database