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[182355_at]

Description K08D9.2 /REP_DB=WormBase Gene ID /WP=CE19982 /TR=Q9TXN2 /GB=AAC69352.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 16      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 35
(2.6)
A 		36.8
(3)
A 		8.7
(-3)
A 		36.6
(3)
A 		28
B 7.2
(-2.9)
A 		6.9
(-3)
A 		11.4
(-1.5)
A 		24.8
(3)
A 		18
C 2.4
(-3)
A 		9.3
(-1.7)
A 		35
(3)
A 		8
(-2)
A 		33
avr 14.9
(-3) 		17.7
(-1) 		18.4
(-0.4) 		23.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 987
1 2 3 4 5 6 range
A 17.6
(-2.9)
A 		6.3
(-3)
A 		50
(-2.7)
P 		938.8
(3)
P 		710.6
(1.5)
P 		33.6
(-2.8)
A 		933
B 5.5
(-3)
A 		17.4
(-2.9)
A 		52.5
(-2.6)
P 		741.8
(3)
P 		681.3
(2.5)
P 		76.7
(-2.4)
P 		736
C 25.7
(-3)
A 		25.7
(-3)
A 		56
(-2.8)
P 		992.6
(3)
P 		665.5
(1)
P 		83.6
(-2.6)
P 		967
avr 16.3
(-3) 		16.5
(-3) 		52.8
(-2.7) 		891.1
(3) 		685.8
(1.6) 		64.6
(-2.7) 		875
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.7
(3)
A 		8
(0.3)
A 		2.3
(-3)
A 		5.4
(-1.2)
A 		10
B 2.3
(-2)
A 		1.7
(-3)
A 		2.6
(-1.5)
A 		5.3
(3)
A 		4
C 0.8
(-3)
A 		2.7
(-2)
A 		12.2
(3)
A 		1.3
(-2.7)
A 		11
avr 5.3
(1.6) 		4.1
(-2.6) 		5.7
(3) 		4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 3.3
(-3)
A 		2.2
(-3)
A 		10.9
(-2.8)
P 		238.1
(3)
P 		214.4
(2.4)
P 		8.2
(-2.8)
A 		236
B 1.9
(-3)
A 		5.8
(-2.9)
A 		12.8
(-2.8)
P 		196.5
(1.2)
P 		276.8
(3)
P 		28.6
(-2.4)
P 		275
C 9.5
(-3)
A 		7.9
(-3)
A 		14.3
(-2.8)
P 		199.6
(2.5)
P 		215.3
(3)
P 		28
(-2.4)
P 		207
avr 4.9
(-3) 		5.3
(-3) 		12.7
(-2.8) 		211.4
(2.4) 		235.5
(3) 		21.6
(-2.6) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15546
Sequence Type Exemplar sequence
Representative Public ID K08D9.2 NCBI
Target Description K08D9.2 /REP_DB=WormBase Gene ID /WP=CE19982 /TR=Q9TXN2 /GB=AAC69352.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071483 NCBI Caenorhabditis elegans K08D9.2 (K08D9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017194 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3227623:3229955:1 11/11 None
K08D9.2 ENSEMBL cdna:known chromosome:CEL140:V:3227623:3229955:1 gene:K08D9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017186 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3227622-3229955(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D9.2
Entrez Gene 187146 Entrez gene
SwissProt Q9TXN2 EMBL-EBI
WormBase CE19982 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69352 Hypothetical protein K08D9.2 [Caenorhabditis elegans] ref|NP_503884.1| K08D9.2 [Caenorhabditis elegans] 0.0
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 6.0E-92
blast CAE56906 Hypothetical protein CBG24747 [Caenorhabditis briggsae] 7.0E-91
blast NP_503533 T06A1.1 [Caenorhabditis elegans] gb|AAC17772.1| Hypothetical protein T06A1.1 [Caenorhabditis elegans] 2.0E-90
blast NP_503533 T06A1.1 [Caenorhabditis elegans] gb|AAC17772.1| Hypothetical protein T06A1.1 [Caenorhabditis elegans] 8.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 7.2E-113
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 8.0E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503884.1 1 5-27
K08D9.2 1 5-27
GENEFINDER00000017194 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182355_AT
aaggcacactcaatacagacacaggaatgtcattatcgaagtcgtttccattcgaaatgg
gtgatcaatgttgatatcgatgagcggttggtgtggactcactctgacagtttgctgcat
tttttgagaaccctccccccaacaatcgccaaaataaatattgcgacaagttcagttgag
aagacaggaaaatcgccggctaaaatgcacaacttctcagagctacactcagaattgatg
ttcttgaaatacaataaaacaggcgagataaaatggagtaatttcaagggaatgtatcga
cccgagaaaatattcacattgtctggaaattggtccaatctggaagaaaattatgttcat
gtcatggtcatgccaaaacgaatcggtcattttagaaaatacaaaaacactggtgcacat
cgcccagaaggatactcgttcaagcactcttcagaagaaactcggttggatccaactttt
gaaaaccaattagctacaaatgttttggaaaaagtaggctacgtatataatcaacgagga
attcgatgcgaagagctgccggagatattcttttcagttttcacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCACACTCAATACAGACACAGG 329 161 775 Antisense
GTCATTATCGAAGTCGTTTCCATTC 543 467 803 Antisense
TGAGCGGTTGGTGTGGACTCACTCT 609 567 855 Antisense
GACTCACTCTGACAGTTTGCTGCAT 571 373 870 Antisense
ATCGCCGGCTAAAATGCACAACTTC 520 37 966 Antisense
GCACAACTTCTCAGAGCTACACTCA 592 317 981 Antisense
CAAAAACACTGGTGCACATCGCCCA 453 191 1176 Antisense
ACATCGCCCAGAAGGATACTCGTTC 497 103 1191 Antisense
ATACTCGTTCAAGCACTCTTCAGAA 64 25 1206 Antisense
ATTCGATGCGAAGAGCTGCCGGAGA 390 9 1315 Antisense
GAGATATTCTTTTCAGTTTTCACCA 439 397 1336 Antisense
Sequence Source Affymetrix Proprietary Database