[Home] | [Total List]

[182354_at]

Description T05C3.4 /REP_DB=WormBase Gene ID /WP=CE13227 /TR=O16301 /GB=AAB65362.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 11      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 20.4
(-0.8)
A 		3.4
(-3)
A 		21.8
(-0.7)
A 		50.8
(3)
A 		47
B 22.5
(-0.6)
A 		34.3
(0.8)
A 		2.4
(-3)
A 		53.3
(3)
A 		51
C 25.6
(-1.6)
A 		31.8
(-1.2)
A 		5.1
(-3)
A 		93.7
(3)
P 		89
avr 22.8
(-1.6) 		23.2
(-1.6) 		9.8
(-3) 		65.9
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 45.8
(2.9)
A 		2.2
(-3)
A 		46.7
(3)
A 		7
(-2.4)
A 		17.7
(-0.9)
A 		22.6
(-0.2)
A 		45
B 17.9
(0.6)
A 		22.7
(1.6)
A 		1.3
(-3)
A 		2
(-2.8)
A 		29.1
(3)
A 		10.3
(-1.1)
A 		28
C 17.8
(-0.6)
A 		38.2
(3)
A 		4.3
(-3)
A 		27.6
(1.1)
A 		6
(-2.7)
A 		24.7
(0.6)
A 		34
avr 27.2
(3) 		21
(0.5) 		17.4
(-0.9) 		12.2
(-3) 		17.6
(-0.8) 		19.2
(-0.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.4
(3)
A 		0.7
(-3)
A 		5.7
(1.5)
A 		7.4
(3)
A 		7
B 7.2
(0.7)
A 		8.5
(1.4)
A 		0.6
(-3)
A 		11.4
(3)
A 		11
C 8.5
(-0.1)
A 		9.1
(0.1)
A 		1.8
(-3)
A 		15.8
(3)
P 		14
avr 7.7
(0.4) 		6.1
(-0.7) 		2.7
(-3) 		11.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.4
(1.9)
A 		0.8
(-3)
A 		10.2
(3)
A 		1.8
(-2.4)
A 		5.3
(-0.1)
A 		5.5
(0)
A 		9
B 6.2
(0.1)
A 		7.5
(0.8)
A 		0.3
(-3)
A 		0.5
(-2.9)
A 		11.8
(3)
A 		3.8
(-1.2)
A 		12
C 6.6
(0.1)
A 		11.7
(3)
A 		1.1
(-3)
A 		5.6
(-0.5)
A 		1.9
(-2.5)
A 		8.3
(1.1)
A 		11
avr 7.1
(3) 		6.7
(2.5) 		3.9
(-1.3) 		2.6
(-3) 		6.3
(1.9) 		5.9
(1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11484
Sequence Type Exemplar sequence
Representative Public ID T05C3.4 NCBI
Target Description T05C3.4 /REP_DB=WormBase Gene ID /WP=CE13227 /TR=O16301 /GB=AAB65362.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182425
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006788 ENSEMBL cdna:SNAP chromosome:CEL140:V:5485555:5488540:-1 None
GENEFINDER00000006794 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5484857:5488678:-1 None
NM_182425 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-18) (grl-18) mRNA, complete cds. None
T05C3.4 ENSEMBL cdna:known chromosome:CEL140:V:5485509:5488678:-1 gene:T05C3.4 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182424 4/11 Cross Hyb Matching Probes None
NM_072048 5/11 Cross Hyb Matching Probes None
SNAP00000006787 4/11 Cross Hyb Matching Probes None
GENEFINDER00000006793 4/11 Cross Hyb Matching Probes None
T05C3.7 5/11 Cross Hyb Matching Probes None
T05C3.8 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5480685-5488540(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-18
Ensembl T05C3.4
Entrez Gene 353441 Entrez gene
WormBase CE39030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_872225 GRound-Like (grd related) family member (grl-18) [Caenorhabditis elegans] gb|AAO26000.2| Ground-like (grd related) protein 18 [Caenorhabditis elegans] 0.0
blast NP_872225 GRound-Like (grd related) family member (grl-18) [Caenorhabditis elegans] gb|AAO26000.2| Ground-like (grd related) protein 18 [Caenorhabditis elegans] 1.0E-174
blast CAE64626 Hypothetical protein CBG09384 [Caenorhabditis briggsae] 1.0E-146
blast CAE64626 Hypothetical protein CBG09384 [Caenorhabditis briggsae] 1.0E-125
blast CAE64626 Hypothetical protein CBG09384 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 4.0E-17
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:182354_AT
acctattgcattgtttttactggagttttgtcatggactgttctcacttcattaaataac
ttgttccgacttctccccgacttcctattaagattcattcagcctttgttgctgtattct
tctgatttgttctggtcaaaatcctacatcttctgcgggctggcatttgcattatacagt
tttttaccaactacgatttggttcggatttaccaatgaagttcatattttgaacgacaca
ttaatgagaaccagaaatccggaattagttaaaacggcaaccaatacgacggctatattc
actataatttatttcataattatttgtgtactgggaattaagacatctgtaatcattaat
aaaaataagcaagccctttctgcaatgtatgagaaaattgccaaaaaactcacacatatc
gcaattgtccactgcgtcgtgtttgctggaattttattatggagtgttctcacttcattg
aattctttctggaactttttcccagatttcattattgggatcaatcaaactttgatggtt
ttctcctcggatttagtaggccatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTATTGCATTGTTTTTACTGGAG 314 87 1753 Antisense
TTTGTCATGGACTGTTCTCACTTCA 452 667 1779 Antisense
CTCCCCGACTTCCTATTAAGATTCA 582 233 1825 Antisense
TAAGATTCATTCAGCCTTTGTTGCT 400 637 1841 Antisense
GTTGCTGTATTCTTCTGATTTGTTC 35 441 1860 Antisense
GTCAAAATCCTACATCTTCTGCGGG 101 465 1887 Antisense
CTTCTGCGGGCTGGCATTTGCATTA 180 219 1902 Antisense
AACCAATACGACGGCTATATTCACT 132 147 2031 Antisense
AAGCAAGCCCTTTCTGCAATGTATG 61 153 2119 Antisense
ACTTTGATGGTTTTCTCCTCGGATT 649 101 2281 Antisense
TTCTCCTCGGATTTAGTAGGCCATG 63 693 2293 Antisense
Sequence Source Affymetrix Proprietary Database