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[182352_at]

Description W07E6.3 /REP_DB=WormBase Gene ID /WP=CE17295 /TR=Q9TYV2 /GB=AAC78178.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 18      6grp_total > 13      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 234.1
(3)
P 		191.8
(-0.8)
P 		167.5
(-3)
M 		220.6
(1.8)
P 		67
B 284.4
(3)
P 		186.8
(-0.6)
P 		119.6
(-3)
P 		195.6
(-0.2)
P 		165
C 214.5
(2.5)
P 		172.6
(0.1)
P 		118.4
(-3)
P 		223.4
(3)
P 		105
avr 244.3
(3) 		183.7
(-0.3) 		135.2
(-3) 		213.2
(1.3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 257.1
(3)
P 		227.9
(1.9)
P 		187.1
(0.4)
P 		151.3
(-0.9)
P 		122.1
(-2)
A 		96.1
(-3)
A 		161
B 248.1
(3)
P 		235.4
(2.6)
P 		176.8
(0.7)
P 		230.5
(2.4)
P 		108.2
(-1.6)
M 		64.8
(-3)
A 		183
C 193
(2.1)
P 		210.9
(2.9)
P 		214.2
(3)
P 		180.1
(1.5)
P 		98.1
(-2)
A 		74.6
(-3)
A 		140
avr 232.7
(3) 		224.7
(2.7) 		192.7
(1.4) 		187.3
(1.2) 		109.5
(-1.8) 		78.5
(-3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 85.2
(3)
P 		41.6
(-1.9)
P 		43.8
(-1.7)
M 		32.3
(-3)
P 		53
B 90.7
(3)
P 		46.1
(-1.2)
P 		27.7
(-3)
P 		41.7
(-1.7)
P 		63
C 71
(3)
P 		49.6
(-0.9)
P 		41.3
(-2.4)
P 		37.7
(-3)
P 		33
avr 82.3
(3) 		45.8
(-1.9) 		37.6
(-2.9) 		37.2
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 47.4
(-0.5)
P 		81.1
(3)
P 		40.8
(-1.2)
P 		38.4
(-1.4)
P 		36.8
(-1.6)
A 		23.4
(-3)
A 		58
B 86.3
(3)
P 		78.4
(2.2)
P 		42.9
(-1.2)
P 		61.1
(0.6)
P 		44
(-1.1)
M 		24.2
(-3)
A 		62
C 71.5
(3)
P 		64.4
(2.1)
P 		54.5
(0.8)
P 		36.2
(-1.6)
P 		31.7
(-2.1)
A 		25
(-3)
A 		47
avr 68.4
(2.3) 		74.6
(3) 		46.1
(-0.4) 		45.2
(-0.5) 		37.5
(-1.4) 		24.2
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4426
Sequence Type Exemplar sequence
Representative Public ID W07E6.3 NCBI
Target Description W07E6.3 /REP_DB=WormBase Gene ID /WP=CE17295 /TR=Q9TYV2 /GB=AAC78178.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061346 NCBI Caenorhabditis elegans W07E6.3 (W07E6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000002754 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:495423:498658:1 11/11 None
W07E6.3 ENSEMBL cdna:known chromosome:CEL140:II:494576:498658:1 gene:W07E6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002747 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:494575-498658(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07E6.3
Entrez Gene 189276 Entrez gene
SwissProt Q9TYV2 EMBL-EBI
WormBase CE17295 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78178 Hypothetical protein W07E6.3 [Caenorhabditis elegans] ref|NP_493747.1| W07E6.3 [Caenorhabditis elegans] sp|Q9TYV2|SMSR2_CAEEL Sphingomyelin synthase-related 0.0
blast CAE62873 Hypothetical protein CBG07059 [Caenorhabditis briggsae] 1.0E-158
blast XP_392299 PREDICTED: similar to ENSANGP00000021414 [Apis mellifera] 2.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493747.1 3 156-173,185-207,278-295
W07E6.3 3 156-173,185-207,278-295
GENEFINDER00000002754 3 129-146,158-180,251-268
Sequence
Target Sequence 
>C. ELEGANS:182352_AT
attgcaatggcttactctttcagagcactttgtgtgaccattttccaggtcccggtccca
tctataaacacctattgtgctccaaaatcaaactcatcactggaacttgtagccggtcga
gttgtgaaaatgttctggagcgctggaatagagcagctccgtcctcgtgagctgtgtgga
gatttgatagtgtccgggcataccctgacgattttcaccgcatttttggtattcaaaacg
tatgctccacaacgattacagccactctctcatatctaccacgttctggctttcacagca
cttttctcgattctcctcgcccgtaagcactatatgatcgatatagtgttaggatataca
gtatctaccagaatttttatggaatatcacgcacttgcggcttcatatcataacaggacg
tttgaaactaatccattggcttggtccttctggtcattttttatcccaatttttgaatgt
gatgctcctgcaaatatgcacaatcacctgcttctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCAATGGCTTACTCTTTCAGAG 562 5 577 Antisense
GCACTTTGTGTGACCATTTTCCAGG 566 315 601 Antisense
ATCACTGGAACTTGTAGCCGGTCGA 132 27 672 Antisense
TCCGTCCTCGTGAGCTGTGTGGAGA 575 593 734 Antisense
TGCTCCACAACGATTACAGCCACTC 619 581 819 Antisense
TCATATCTACCACGTTCTGGCTTTC 95 621 846 Antisense
TCCTCGCCCGTAAGCACTATATGAT 345 593 890 Antisense
ACGCACTTGCGGCTTCATATCATAA 624 91 965 Antisense
ACTAATCCATTGGCTTGGTCCTTCT 636 99 1003 Antisense
TGGTCCTTCTGGTCATTTTTTATCC 366 551 1018 Antisense
AATATGCACAATCACCTGCTTCTCT 609 173 1069 Antisense
Sequence Source Affymetrix Proprietary Database