[Home] | [Total List]

[182351_at]

Description K05F6.2 /REP_DB=WormBase Gene ID /WP=CE17160 /TR=O44866 /GB=AAB95031.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 3.3
(-3)
A 		8.4
(1.6)
A 		10
(3)
A 		9
(2.1)
A 		7
B 2.7
(-3)
A 		6.7
(-2.4)
A 		43.6
(3)
A 		32
(1.3)
A 		41
C 3
(-2.8)
A 		7.1
(-2.2)
A 		1.5
(-3)
A 		41.9
(3)
A 		40
avr 3
(-3) 		7.4
(-1.9) 		18.4
(0.8) 		27.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.5
(-1.2)
A 		20.3
(3)
A 		8.6
(-0.8)
A 		1.8
(-3)
A 		3.4
(-2.5)
A 		2
(-2.9)
A 		19
B 15
(0.4)
A 		19.3
(1.4)
A 		1.6
(-3)
A 		2.7
(-2.7)
A 		2.7
(-2.7)
A 		25.6
(3)
A 		24
C 3.8
(-2.8)
A 		7.9
(-2)
A 		4.3
(-2.7)
A 		31.8
(3)
A 		3
(-3)
A 		30.8
(2.8)
A 		29
avr 8.8
(-0.9) 		15.8
(1.7) 		4.8
(-2.3) 		12.1
(0.3) 		3
(-3) 		19.5
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-3)
A 		1.8
(-0.4)
A 		2.6
(3)
A 		1.3
(-2.6)
A 		1
B 0.9
(-3)
A 		1.7
(-2.5)
A 		10.1
(3)
A 		6.8
(0.8)
A 		9
C 1
(-2.5)
A 		2
(-1.6)
A 		0.5
(-3)
A 		7.1
(3)
A 		7
avr 1
(-3) 		1.8
(-1.8) 		4.4
(2) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.4
(-2.2)
A 		7.2
(3)
A 		1.9
(-1.7)
A 		0.5
(-3)
A 		1
(-2.6)
A 		0.5
(-3)
A 		7
B 5.2
(0.2)
A 		6.4
(1)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		1.1
(-2.5)
A 		9.5
(3)
A 		9
C 1.4
(-2.7)
A 		2.4
(-2.1)
A 		1.1
(-2.9)
A 		6.4
(0.5)
A 		1
(-3)
A 		10.3
(3)
A 		9
avr 2.7
(-1.2) 		5.3
(1.4) 		1.1
(-2.9) 		2.5
(-1.4) 		1
(-3) 		6.8
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5386
Sequence Type Exemplar sequence
Representative Public ID K05F6.2 NCBI
Target Description K05F6.2 /REP_DB=WormBase Gene ID /WP=CE17160 /TR=O44866 /GB=AAB95031.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061595 NCBI Caenorhabditis elegans K05F6.2 (K05F6.2) mRNA, complete cds. 11/11 None
K05F6.2 ENSEMBL cdna:known chromosome:CEL140:II:1556585:1563218:1 gene:K05F6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019329 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1556583-1563217(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.2
Entrez Gene 187032 Entrez gene
SwissProt O44866 EMBL-EBI
WormBase CE17160 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95031 Hypothetical protein K05F6.2 [Caenorhabditis elegans] ref|NP_493996.1| K05F6.2 [Caenorhabditis elegans] 0.0
blast AAB95027 Hypothetical protein K05F6.7 [Caenorhabditis elegans] ref|NP_493995.1| K05F6.7 [Caenorhabditis elegans] 1.0E-28
blast AAC67475 Hypothetical protein F58E1.14 [Caenorhabditis elegans] ref|NP_494048.1| F58E1.14 [Caenorhabditis elegans] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-8
Sequence
Target Sequence 
>C. ELEGANS:182351_AT
caagtgcgtatctcaatggtgtctaagaaaaccaaggaactagtcagagaatttcatatc
ctcaaaaacattcgaccacgtctggcattttatgattcgataggctatatagtggctctg
agtagtgtaggaagtttttacctatttaaaaatgagaacattgcggaatacgcagaactg
gacattaaattttctgcaccacactttgatgcaaaaagctggttgaaacattttctgtat
atcttccacgtgtcagaaatcaatactatagctttcaatctctcagatgaaaaagacatt
aatgtgtttttgaaacattggatcgccggattgaaacccggtctcgaacatttttgcatt
ggaaaacgtggacctgcattcaatcaaaacactattctagaaggaattccccatgagatt
gtaccaagtgacaggaaattcaaaatactctacctagattctgagatgacttctaaagtc
ggaggaatcgatttctacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTGCGTATCTCAATGGTGTCTA 108 185 1012 Antisense
AACATTCGACCACGTCTGGCATTTT 464 137 1078 Antisense
GATAGGCTATATAGTGGCTCTGAGT 284 425 1110 Antisense
TAAATTTTCTGCACCACACTTTGAT 385 641 1197 Antisense
GTATATCTTCCACGTGTCAGAAATC 507 453 1248 Antisense
ATACTATAGCTTTCAATCTCTCAGA 592 23 1274 Antisense
CCCGGTCTCGAACATTTTTGCATTG 477 259 1348 Antisense
AAACGTGGACCTGCATTCAATCAAA 510 127 1375 Antisense
GGAATTCCCCATGAGATTGTACCAA 100 533 1414 Antisense
TACTCTACCTAGATTCTGAGATGAC 443 645 1457 Antisense
GTCGGAGGAATCGATTTCTACTTGG 154 473 1489 Antisense
Sequence Source Affymetrix Proprietary Database