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[182350_at] 7TM chemoreceptor, srw family

Description T05G11.3 /REP_DB=WormBase Gene ID /WP=CE18932 /TR=Q9XXJ9 /GB=CAA19431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 24.8
(-3)
A 		34.1
(-1.7)
A 		44.2
(-0.2)
A 		66.7
(3)
A 		42
B 31.5
(3)
A 		19.3
(-2)
A 		16.9
(-3)
A 		28.1
(1.6)
A 		15
C 21.8
(-3)
A 		59.2
(3)
A 		30.1
(-1.7)
A 		43.8
(0.5)
A 		37
avr 26
(-3) 		37.5
(0.4) 		30.4
(-1.7) 		46.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 10.4
(-3)
A 		38
(1.1)
A 		23.6
(-1.1)
A 		30.9
(0)
A 		30.7
(-0)
A 		51.1
(3)
A 		41
B 2.5
(-3)
A 		24.5
(1.3)
A 		15.7
(-0.4)
A 		33.5
(3)
A 		22.9
(0.9)
A 		14.9
(-0.6)
A 		31
C 18.3
(0.4)
A 		30.7
(3)
A 		29.7
(2.8)
A 		2.9
(-2.9)
A 		27
(2.2)
A 		2.5
(-3)
A 		28
avr 10.4
(-3) 		31.1
(3) 		23
(0.7) 		22.4
(0.5) 		26.9
(1.8) 		22.8
(0.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(-0.7)
A 		7.4
(-3)
A 		11.6
(3)
A 		9.8
(0.4)
A 		4
B 10.1
(3)
A 		4.8
(-2.1)
A 		3.9
(-3)
A 		6
(-1)
A 		6
C 7.2
(-3)
A 		17
(3)
A 		10.5
(-1)
A 		7.4
(-2.9)
A 		10
avr 8.8
(0.3) 		9.7
(3) 		8.7
(-0) 		7.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.9
(-3)
A 		13.5
(3)
A 		5.1
(-1.3)
A 		7.8
(0.1)
A 		9.3
(0.8)
A 		12.4
(2.4)
A 		12
B 0.9
(-3)
A 		8.2
(2.2)
A 		3.8
(-0.9)
A 		8.9
(2.7)
A 		9.3
(3)
A 		5.6
(0.4)
A 		8
C 6.8
(1.2)
A 		9.4
(3)
A 		7.6
(1.8)
A 		0.6
(-3)
A 		8.7
(2.5)
A 		0.8
(-2.9)
A 		9
avr 3.2
(-3) 		10.4
(3) 		5.5
(-1.1) 		5.8
(-0.8) 		9.1
(1.9) 		6.3
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182350_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14638
Sequence Type Exemplar sequence
Representative Public ID T05G11.3 NCBI
Target Description T05G11.3 /REP_DB=WormBase Gene ID /WP=CE18932 /TR=Q9XXJ9 /GB=CAA19431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074590 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-26) (srw-26) mRNA, complete cds. 11/11 None
SNAP00000043856 ENSEMBL cdna:SNAP chromosome:CEL140:V:15933876:15934583:-1 11/11 None
GENEFINDER00000043862 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15930133:15934583:-1 9/11 None
T05G11.3 ENSEMBL cdna:known chromosome:CEL140:V:15933876:15935074:-1 gene:T05G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15933875-15935074(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-26
Ensembl T05G11.3
Entrez Gene 188144 Entrez gene
SwissProt Q9XXJ9 EMBL-EBI
WormBase CE18932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19431 Hypothetical protein T05G11.3 [Caenorhabditis elegans] ref|NP_506991.1| Serpentine Receptor, class W family member (srw-26) [Caenorhabditis elegans] 0.0
blast CAB04303 Hypothetical protein T05G11.1 [Caenorhabditis elegans] emb|CAA19434.1| Hypothetical protein T05G11.1 [Caenorhabditis elegans] ref|NP_506989.1| T05G11.1 [Caenorhabditis elegans] 1.0E-134
blast CAA19431 Hypothetical protein T05G11.3 [Caenorhabditis elegans] ref|NP_506991.1| Serpentine Receptor, class W family member (srw-26) [Caenorhabditis elegans] 1.0E-131
blast CAA19431 Hypothetical protein T05G11.3 [Caenorhabditis elegans] ref|NP_506991.1| Serpentine Receptor, class W family member (srw-26) [Caenorhabditis elegans] 1.0E-85
blast CAB03410 Hypothetical protein T26H5.5 [Caenorhabditis elegans] emb|CAB04856.1| Hypothetical protein T26H5.5 [Caenorhabditis elegans] ref|NP_506844.1| Serpentine Receptor, class W family member (srw-33) [Caenorhabditis elegans] 1.0E-48
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 1.0E-43
blast CAB03410 Hypothetical protein T26H5.5 [Caenorhabditis elegans] emb|CAB04856.1| Hypothetical protein T26H5.5 [Caenorhabditis elegans] ref|NP_506844.1| Serpentine Receptor, class W family member (srw-33) [Caenorhabditis elegans] 4.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 4.6E-34
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 4.6E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506991.1 7 5-24,31-48,90-112,133-155,195-217,243-265,280-302
T05G11.3 7 5-24,31-48,90-112,133-155,195-217,243-265,280-302
SNAP00000043856 4 13-35,75-97,123-145,160-182
GENEFINDER00000043862 3 13-35,75-97,124-143
Sequence
Target Sequence 
>C. ELEGANS:182350_AT
gccaccttaccttcaaactgtgcaaacttttccgtagattcatatcaagttcagtatatt
ttagaagaaactcatatattcgacaacgaaagaatttatgaaatcaatgtatttgtacag
ggactcttattcgagttcaccccatctattattctaccaattgcaactttattattggta
gtcgagaagagaagagccaggaagtcaacagagttaatgaaaagcgtgtccaaccaaaac
agctcggatcgatcgacgactctcgtgatttttatgaccattacattcgttattgctaca
gcaccacgtggattctcctatgttggaaaatttatcatatcccaagtgggtgatgataaa
cctaaattgacactacagagtatgattgttggatttataatcaattttaattctgctata
cacttcttgttatgttattgtcttcacaatgtcttcacaatatcggagtgcggcgaaaga
attgttcagaaaagatcaagaaaagatctcggttgttattctgtcttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCTTACCTTCAAACTGTGCAA 465 279 481 Antisense
AACTGTGCAAACTTTTCCGTAGATT 255 141 496 Antisense
CAGGGACTCTTATTCGAGTTCACCC 544 197 598 Antisense
CACCCCATCTATTATTCTACCAATT 312 201 618 Antisense
AAGCGTGTCCAACCAAAACAGCTCG 602 149 702 Antisense
ACAGCTCGGATCGATCGACGACTCT 305 107 719 Antisense
GACGACTCTCGTGATTTTTATGACC 708 379 735 Antisense
TTACATTCGTTATTGCTACAGCACC 659 683 761 Antisense
CACCACGTGGATTCTCCTATGTTGG 624 201 782 Antisense
TTAATTCTGCTATACACTTCTTGTT 111 685 887 Antisense
GATCTCGGTTGTTATTCTGTCTTGT 530 419 985 Antisense
Sequence Source Affymetrix Proprietary Database