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[182348_at]

Description C39B5.7 /REP_DB=WormBase Gene ID /WP=CE23582 /TR=Q9N5X2 /GB=AAF39771.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 53      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 31.7
(0.3)
A 		52.1
(3)
A 		29.6
(0)
A 		7
(-3)
A 		45
B 10.4
(3)
A 		3.2
(-2.7)
A 		4.6
(-1.6)
A 		2.8
(-3)
A 		8
C 34.4
(3)
A 		2.6
(-3)
A 		18.4
(-0)
A 		6.1
(-2.3)
A 		32
avr 25.5
(3) 		19.3
(1.2) 		17.5
(0.6) 		5.3
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 17.5
(-0.1)
A 		33.8
(3)
A 		21.3
(0.6)
A 		2.3
(-2.9)
A 		1.9
(-3)
A 		6.2
(-2.2)
A 		32
B 27.4
(2.7)
A 		28.4
(3)
A 		27.5
(2.7)
A 		7.2
(-3)
A 		20.6
(0.8)
A 		27.2
(2.7)
A 		21
C 41.6
(3)
A 		24.8
(0.5)
A 		2
(-3)
A 		29.7
(1.2)
A 		1.7
(-3)
A 		10.3
(-1.7)
A 		40
avr 28.8
(2.9) 		29
(3) 		16.9
(-0.5) 		13.1
(-1.6) 		8.1
(-3) 		14.6
(-1.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.5
(3)
A 		11.3
(2.9)
A 		7.7
(0.8)
A 		1
(-3)
A 		11
B 3.3
(3)
A 		0.8
(-2.6)
A 		1.1
(-1.9)
A 		0.6
(-3)
A 		3
C 11.4
(3)
A 		0.7
(-3)
A 		6.4
(0.2)
A 		1
(-2.8)
A 		11
avr 8.7
(3) 		4.3
(-0.4) 		5.1
(0.2) 		0.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.2
(-1.6)
A 		12
(3)
A 		4.6
(-0.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.5
(-2.5)
A 		11
B 9.5
(2.6)
A 		9.5
(2.6)
A 		6.7
(0.5)
A 		1.9
(-3)
A 		8.4
(1.8)
A 		10.1
(3)
A 		8
C 15.4
(3)
A 		7.6
(-0.1)
A 		0.5
(-3)
A 		6
(-0.8)
A 		0.6
(-3)
A 		3.5
(-1.8)
A 		15
avr 9.4
(2.7) 		9.7
(3) 		3.9
(-2) 		2.8
(-3) 		3.2
(-2.7) 		5
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8278
Sequence Type Exemplar sequence
Representative Public ID C39B5.7 NCBI
Target Description C39B5.7 /REP_DB=WormBase Gene ID /WP=CE23582 /TR=Q9N5X2 /GB=AAF39771.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065112(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065112 NCBI Caenorhabditis elegans C39B5.7 (C39B5.7) mRNA, complete cds. 11/11 None
SNAP00000012609 ENSEMBL cdna:SNAP chromosome:CEL140:III:2219749:2223282:1 11/11 None
C39B5.7 ENSEMBL cdna:known chromosome:CEL140:III:2219785:2222353:1 gene:C39B5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012623 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2219784-2222353(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B5.7
Entrez Gene 183326 Entrez gene
SwissProt Q9N5X2 EMBL-EBI
WormBase CE23582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39771 Hypothetical protein C39B5.7 [Caenorhabditis elegans] ref|NP_497513.1| C39B5.7 [Caenorhabditis elegans] 1.0E-159
blast AAF39771 Hypothetical protein C39B5.7 [Caenorhabditis elegans] ref|NP_497513.1| C39B5.7 [Caenorhabditis elegans] 1.0E-156
blast CAB03489 Hypothetical protein ZC47.4 [Caenorhabditis elegans] ref|NP_497367.1| ZC47.4 [Caenorhabditis elegans] 4.0E-47
blast CAB03491 Hypothetical protein ZC47.3 [Caenorhabditis elegans] ref|NP_001022976.1| ZC47.3 [Caenorhabditis elegans] 2.0E-44
blast NP_503905 T28A11.21 [Caenorhabditis elegans] gb|AAC48129.2| Hypothetical protein T28A11.21 [Caenorhabditis elegans] 7.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.7E-56
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.7E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.7E-56
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-12
Sequence
Target Sequence 
>C. ELEGANS:182348_AT
ttcatgcgagcagcgttcaacgacttggcgagcgtattgaaaaacgtgaagaagttcgtt
tttcagaactattcgaaagtaaaacaacaagccatcacatcgtcgataaatgatatgttg
gaaaataaatgtatagccgtagagtcagtagtactatacaacttcccacatgatgatatt
ttgaacatcatttcgagttgtcaagctgaagtgctcaaagatattgtattatggcaccgc
gacggagtcgagttatctgaaagaatcacttgtctggaccaatggaaaaaagcacgaact
ttgcattgtcggtttttgttttgtgatctagtaccaattgagcacttttttcactttgaa
gagttcagtattcaaattgacaatctctcaatgccaaatgcgattaaaattcgagatgac
ctcatgaacaaaactacattcaagacctgcactatttcaactcaccataatgtgcaatca
attgaacttgcaagaatatttcaaccggactatatgggcgacattgactataacatcaaa
tattctaataacactggcaccttcgaaatttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATGCGAGCAGCGTTCAACGACT 440 685 265 Antisense
AAACAACAAGCCATCACATCGTCGA 10 129 346 Antisense
GTACTATACAACTTCCCACATGATG 460 459 415 Antisense
ATTATGGCACCGCGACGGAGTCGAG 302 7 492 Antisense
GAATCACTTGTCTGGACCAATGGAA 267 327 527 Antisense
GCACGAACTTTGCATTGTCGGTTTT 515 315 556 Antisense
GACAATCTCTCAATGCCAAATGCGA 114 365 643 Antisense
AACTACATTCAAGACCTGCACTATT 26 141 696 Antisense
CTGCACTATTTCAACTCACCATAAT 687 237 711 Antisense
TCAACCGGACTATATGGGCGACATT 391 631 765 Antisense
AACACTGGCACCTTCGAAATTTCTT 539 135 814 Antisense
Sequence Source Affymetrix Proprietary Database