[Home] | [Total List]

[182347_at]

Description F56H6.13 /REP_DB=WormBase Gene ID /WP=CE25913 /TR=Q9GS12 /GB=CAC14333.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 41.9
(3)
A 		15.1
(-1.2)
A 		30.3
(1.2)
A 		4
(-3)
A 		38
B 44.2
(3)
A 		31.3
(0.6)
A 		11.9
(-3)
A 		31.1
(0.6)
A 		32
C 18.3
(-1.4)
A 		7.3
(-3)
A 		8
(-2.9)
A 		49.3
(3)
A 		42
avr 34.8
(3) 		17.9
(-2.6) 		16.7
(-3) 		28.1
(0.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 19.6
(-1.6)
A 		6.8
(-3)
A 		63.1
(3)
A 		10.4
(-2.6)
A 		46.2
(1.2)
A 		40.6
(0.6)
A 		56
B 19.2
(1.9)
A 		22.9
(3)
A 		7.2
(-1.7)
A 		18.4
(1.7)
A 		18.7
(1.8)
A 		2.7
(-3)
A 		20
C 6
(-2.5)
A 		38.5
(3)
A 		2.8
(-3)
A 		7
(-2.3)
A 		7.3
(-2.2)
A 		6.2
(-2.4)
A 		36
avr 14.9
(-1.6) 		22.7
(2.2) 		24.4
(3) 		11.9
(-3) 		24.1
(2.9) 		16.5
(-0.8) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.3
(3)
A 		3.3
(-1.9)
A 		7.9
(-0)
A 		0.6
(-3)
A 		15
B 14.1
(3)
A 		7.7
(-0.4)
A 		2.8
(-3)
A 		6.6
(-1)
A 		11
C 6.1
(0.9)
A 		2.1
(-3)
A 		2.8
(-2.3)
A 		8.3
(3)
A 		6
avr 11.8
(3) 		4.4
(-3) 		4.5
(-2.9) 		5.2
(-2.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.6
(-2.4)
A 		2.4
(-3)
A 		13.8
(2.9)
A 		2.6
(-2.9)
A 		13.9
(3)
A 		9.9
(0.9)
A 		12
B 6.7
(2.2)
A 		7.6
(3)
A 		1.7
(-2.4)
A 		4.9
(0.5)
A 		7.6
(3)
A 		1
(-3)
A 		7
C 2.2
(-2.2)
A 		11.7
(3)
A 		0.7
(-3)
A 		1.4
(-2.6)
A 		2.4
(-2.1)
A 		2.1
(-2.2)
A 		11
avr 4.2
(-1.6) 		7.2
(2) 		5.4
(-0.1) 		3
(-3) 		8
(3) 		4.3
(-1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1257
Sequence Type Exemplar sequence
Representative Public ID F56H6.13 NCBI
Target Description F56H6.13 /REP_DB=WormBase Gene ID /WP=CE25913 /TR=Q9GS12 /GB=CAC14333.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060701 NCBI Caenorhabditis elegans F56H6.13 (F56H6.13) mRNA, complete cds. 11/11 None
GENEFINDER00000044671 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12289343:12300334:1 11/11 None
SNAP00000044650 ENSEMBL cdna:SNAP chromosome:CEL140:I:12291392:12293498:1 10/11 None
F56H6.13 ENSEMBL cdna:known chromosome:CEL140:I:12291392:12293498:1 gene:F56H6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12291322-12293429(+) 97.86 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.13
Entrez Gene 186423 Entrez gene
SwissProt Q9GS12 EMBL-EBI
WormBase CE25913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14333 Hypothetical protein F56H6.13 [Caenorhabditis elegans] ref|NP_493102.1| F56H6.13 [Caenorhabditis elegans] 0.0
blast CAB04491 Hypothetical protein F56H6.2 [Caenorhabditis elegans] ref|NP_493103.1| F56H6.2 [Caenorhabditis elegans] 0.0
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 0.0
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 1.0E-176
blast CAC14333 Hypothetical protein F56H6.13 [Caenorhabditis elegans] ref|NP_493102.1| F56H6.13 [Caenorhabditis elegans] 1.0E-150
blast AAC17803 Hypothetical protein T24A6.16 [Caenorhabditis elegans] 3.0E-94
blast AAF39797 Hypothetical protein F40C5.1 [Caenorhabditis elegans] ref|NP_504005.1| F40C5.1 [Caenorhabditis elegans] 3.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 9.0E-124
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 6.3E-34
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.1E-92
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493102.1 1 11-28
F56H6.13 1 11-28
GENEFINDER00000044671 1 12-29
SNAP00000044650 1 11-28
Sequence
Target Sequence 
>C. ELEGANS:182347_AT
gcatttattcgagaccctattcgccggtttttgtcattttacctaaacaacaaaagcgag
tgctacgattgtggaagtgatatgagatgcgttgtcgagaggatctacaatgggctgtgg
aatattcaaaatgatcggaacatgacttttatacttatggaagcccatgcggcgccactt
tcttggaactgcggctttaacgagggagtctcgaaatgggagctgctaatgatggggtca
gatttggacgagagaacttcatcgacaacgaaactggcaaaaattttgaggaagcaaggg
gtcaggcacgagcttgtggagagcattgagaaggatattttgaaaggagaaaccgctcac
tctacattcaaatcaacaaaccgcctggcagccgagaaacaaattcgcgaggacccagtc
gttcggtatttcctgcacaagatctactttttcgactatgtcgtgtttcccttcaaacgt
gacgtcttggatcctgaataccgatcgatttttgcgacggctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTATTCGAGACCCTATTCGCC 171 307 394 Antisense
CGCCACTTTCTTGGAACTGCGGCTT 368 257 566 Antisense
ACTGCGGCTTTAACGAGGGAGTCTC 45 97 581 Antisense
GGGTCAGGCACGAGCTTGTGGAGAG 242 497 692 Antisense
AAAGGAGAAACCGCTCACTCTACAT 139 121 736 Antisense
TCAAATCAACAAACCGCCTGGCAGC 27 629 761 Antisense
CAAATTCGCGAGGACCCAGTCGTTC 172 193 793 Antisense
TCGTTCGGTATTTCCTGCACAAGAT 389 603 812 Antisense
TTTCGACTATGTCGTGTTTCCCTTC 132 671 843 Antisense
AAACGTGACGTCTTGGATCCTGAAT 142 125 868 Antisense
ACCGATCGATTTTTGCGACGGCTCC 676 85 893 Antisense
Sequence Source Affymetrix Proprietary Database