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[182346_at]

Description ZC123.1 /REP_DB=WormBase Gene ID /WP=CE28152 /TR=O45021 /GB=AAB97604.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1167
1 2 3 4 range
A 104.5
(-3)
A 		1192.2
(3)
P 		1148.8
(2.8)
P 		185.1
(-2.6)
A 		1088
B 83.3
(-3)
A 		1137.6
(2.9)
P 		1154.7
(3)
P 		77
(-3)
A 		1078
C 25.7
(-3)
A 		886.6
(1.8)
P 		1090.9
(3)
P 		109.1
(-2.5)
A 		1065
avr 71.2
(-3) 		1072.1
(2.7) 		1131.5
(3) 		123.7
(-2.7) 		1060

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 710
1 2 3 4 5 6 range
A 89.9
(-3)
A 		762.6
(3)
P 		365.6
(-0.5)
P 		333.4
(-0.8)
P 		304.5
(-1.1)
P 		141
(-2.5)
P 		673
B 52.8
(-3)
A 		619.2
(3)
P 		432.5
(1)
P 		357.8
(0.2)
P 		288.4
(-0.5)
P 		92.7
(-2.6)
M 		566
C 80.6
(-3)
A 		579.2
(3)
P 		428.4
(1.2)
P 		221.5
(-1.3)
P 		364.3
(0.4)
P 		108.1
(-2.7)
M 		499
avr 74.4
(-3) 		653.7
(3) 		408.8
(0.5) 		304.2
(-0.6) 		319.1
(-0.5) 		113.9
(-2.6) 		579
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 38
(-2.8)
A 		258.8
(2.1)
P 		300.3
(3)
P 		27.1
(-3)
A 		273
B 26.6
(-2.8)
A 		281
(3)
P 		267.6
(2.7)
P 		16.4
(-3)
A 		265
C 8.5
(-3)
A 		254.9
(1)
P 		380.2
(3)
P 		18.4
(-2.8)
A 		372
avr 24.4
(-2.9) 		264.9
(2) 		316
(3) 		20.6
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 16.6
(-3)
A 		271.2
(3)
P 		79.6
(-1.5)
P 		84.6
(-1.4)
P 		91.9
(-1.2)
P 		34.3
(-2.6)
P 		255
B 18.4
(-3)
A 		206.1
(3)
P 		105
(-0.2)
P 		94.8
(-0.6)
P 		117.2
(0.2)
P 		34.6
(-2.5)
M 		188
C 29.9
(-3)
A 		176.7
(3)
P 		109
(0.2)
P 		44.5
(-2.4)
P 		117.9
(0.6)
P 		36.2
(-2.7)
M 		147
avr 21.6
(-3) 		218
(3) 		97.9
(-0.7) 		74.6
(-1.4) 		109
(-0.3) 		35
(-2.6) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14
Sequence Type Exemplar sequence
Representative Public ID ZC123.1 NCBI
Target Description ZC123.1 /REP_DB=WormBase Gene ID /WP=CE28152 /TR=O45021 /GB=AAB97604.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058381 NCBI Caenorhabditis elegans ZC123.1 (ZC123.1) mRNA, complete cds. 11/11 None
GENEFINDER00000024256 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:822185:841658:1 11/11 None
SNAP00000024253 ENSEMBL cdna:SNAP chromosome:CEL140:I:837999:841658:1 11/11 None
ZC123.1 ENSEMBL cdna:known chromosome:CEL140:I:837998:841749:1 gene:ZC123.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:837291-841658(+) 96.32 97.36
Public Domain and Genome References
Gene Title
Ensembl ZC123.1
Entrez Gene 171671 Entrez gene
SwissProt O45021 EMBL-EBI
WormBase CE28152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97604 Hypothetical protein ZC123.1 [Caenorhabditis elegans] ref|NP_490782.1| ZC123.1 [Caenorhabditis elegans] 0.0
blast CAE71595 Hypothetical protein CBG18553 [Caenorhabditis briggsae] 0.0
blast AAB97603 Hypothetical protein ZC123.3 [Caenorhabditis elegans] ref|NP_490781.1| ZC123.3 [Caenorhabditis elegans] 0.0
blast H87721 protein ZC123.2 [imported] - Caenorhabditis elegans 0.0
blast CAE61304 Hypothetical protein CBG05137 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.99999998401679E-11
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.9999998245167E-15
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 5.99999984842725E-5
Pfam IPR001356 EMBL-EBI Homeobox 0.051
Pfam IPR001356 EMBL-EBI Homeobox 0.013
Pfam IPR001356 EMBL-EBI Homeobox 1.3E-21
Pfam IPR001356 EMBL-EBI Homeobox 2.3E-19
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024256 2 1308-1330,1343-1365
Sequence
Target Sequence 
>C. ELEGANS:182346_AT
agagtcaagcggcagttcttcgctccggataatgctgcatcctgtgttccgtgtccggca
tgggtgacacttgccttggctagcagaaagaagagagaagtcgagaaggtggagaagcat
atgacgatgagcgaagctatcgcggatatcagagcaaagaaggggtataaggaaggattt
gatgatgatgatgaggacgacgaatcctctgaggaaaccatcgagacccgcagaaagcaa
cgccgctcctgccaacaaagtgacgattgcctgaacaacgtcgagtacgcagtcttccaa
aaagtctatgcagacaagagaaccaaacgagaagccgtgttccgtcgtaagaagtgctcg
aggtgtggagtctctgggctcacgccacatcgtgtcaagagaaacttcgggcagccgaat
atcaacgtctcggagcagaattgcatggcattcccacagtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTCAAGCGGCAGTTCTTCGCTC 97 69 1729 Antisense
TTCTTCGCTCCGGATAATGCTGCAT 532 689 1744 Antisense
GTTCCGTGTCCGGCATGGGTGACAC 130 441 1774 Antisense
GTGACACTTGCCTTGGCTAGCAGAA 54 483 1792 Antisense
GAAACCATCGAGACCCGCAGAAAGC 353 359 1942 Antisense
CGCTCCTGCCAACAAAGTGACGATT 678 253 1972 Antisense
ACAACGTCGAGTACGCAGTCTTCCA 235 113 2003 Antisense
AGCCGTGTTCCGTCGTAAGAAGTGC 695 83 2061 Antisense
GCTCGAGGTGTGGAGTCTCTGGGCT 70 299 2084 Antisense
TCGGGCAGCCGAATATCAACGTCTC 590 605 2135 Antisense
AATTGCATGGCATTCCCACAGTGTC 437 175 2167 Antisense
Sequence Source Affymetrix Proprietary Database