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[182345_at]

Description C16C4.3 /REP_DB=WormBase Gene ID /WP=CE08199 /TR=O16555 /GB=AAB93650.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 49.8
(3)
A 		3.2
(-3)
A 		4.1
(-2.9)
A 		16.4
(-1.3)
A 		47
B 4.4
(-3)
A 		8.9
(-0.3)
A 		6.6
(-1.7)
A 		14.5
(3)
A 		10
C 12.3
(3)
A 		6
(-0.6)
A 		5.2
(-1)
A 		1.7
(-3)
A 		11
avr 22.2
(3) 		6
(-2.8) 		5.3
(-3) 		10.9
(-1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7
(-1.5)
A 		14.3
(0.6)
A 		22.8
(3)
A 		5.7
(-1.8)
A 		20
(2.2)
A 		1.6
(-3)
A 		21
B 21.8
(3)
A 		3.3
(-2.3)
A 		12.4
(0.3)
A 		5.8
(-1.5)
A 		0.7
(-3)
A 		7.1
(-1.2)
A 		21
C 17.5
(3)
A 		5.1
(-1.8)
A 		3.4
(-2.4)
A 		4.4
(-2)
A 		3.1
(-2.5)
A 		1.9
(-3)
A 		16
avr 15.4
(3) 		7.6
(-0.9) 		12.9
(1.7) 		5.3
(-2.1) 		7.9
(-0.8) 		3.5
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.1
(3)
A 		0.7
(-3)
A 		1.1
(-2.9)
A 		2.4
(-2.4)
A 		17
B 1.4
(-3)
A 		2.2
(-0.2)
A 		1.5
(-2.6)
A 		3.1
(3)
A 		2
C 4.1
(3)
A 		1.7
(-0.8)
A 		1.8
(-0.6)
A 		0.3
(-3)
A 		4
avr 7.9
(3) 		1.5
(-3) 		1.5
(-3) 		1.9
(-2.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-2)
A 		5.1
(2)
A 		5
(1.9)
A 		1.4
(-1.9)
A 		6
(3)
A 		0.4
(-3)
A 		6
B 7.6
(3)
A 		1.1
(-2.3)
A 		3
(-0.8)
A 		1.5
(-2)
A 		0.3
(-3)
A 		2.7
(-1)
A 		7
C 6.5
(3)
A 		1.5
(-2.1)
A 		0.9
(-2.7)
A 		0.9
(-2.7)
A 		1
(-2.6)
A 		0.6
(-3)
A 		6
avr 5.1
(3) 		2.6
(-0.8) 		3
(-0.2) 		1.3
(-2.8) 		2.4
(-1.2) 		1.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5596
Sequence Type Exemplar sequence
Representative Public ID C16C4.3 NCBI
Target Description C16C4.3 /REP_DB=WormBase Gene ID /WP=CE08199 /TR=O16555 /GB=AAB93650.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061704 NCBI Caenorhabditis elegans C16C4.3 (C16C4.3) mRNA, complete cds. 11/11 None
SNAP00000026901 ENSEMBL cdna:SNAP chromosome:CEL140:II:1875960:1877239:1 11/11 None
GENEFINDER00000026917 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1871550:1877239:1 11/11 None
C16C4.3 ENSEMBL cdna:known chromosome:CEL140:II:1875960:1876861:1 gene:C16C4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1875958-1876860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.3
Entrez Gene 182657 Entrez gene
SwissProt O16555 EMBL-EBI
WormBase CE08199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93659 Hypothetical protein C16C4.15 [Caenorhabditis elegans] ref|NP_494103.1| C16C4.15 [Caenorhabditis elegans] 1.0E-157
blast AAB93661 Hypothetical protein C16C4.4 [Caenorhabditis elegans] ref|NP_494102.2| C16C4.4 [Caenorhabditis elegans] 1.0E-106
blast AAB93650 Hypothetical protein C16C4.3 [Caenorhabditis elegans] ref|NP_494105.1| C16C4.3 [Caenorhabditis elegans] 3.0E-96
blast AAB93650 Hypothetical protein C16C4.3 [Caenorhabditis elegans] ref|NP_494105.1| C16C4.3 [Caenorhabditis elegans] 7.0E-96
blast AAB93650 Hypothetical protein C16C4.3 [Caenorhabditis elegans] ref|NP_494105.1| C16C4.3 [Caenorhabditis elegans] 3.0E-95
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 9.0E-89
blast AAB93657 Hypothetical protein C16C4.12 [Caenorhabditis elegans] ref|NP_494110.1| C16C4.12 [Caenorhabditis elegans] 5.0E-87
blast AAF60435 Hypothetical protein Y16E11A.1 [Caenorhabditis elegans] ref|NP_494144.2| Y16E11A.1 [Caenorhabditis elegans] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 7.1E-52
Pfam IPR002083 EMBL-EBI MATH 3.5E-7
Pfam IPR002083 EMBL-EBI MATH 1.6E-47
Pfam IPR002083 EMBL-EBI MATH 9.0E-34
Pfam IPR002083 EMBL-EBI MATH 1.5E-47
Pfam IPR002083 EMBL-EBI MATH 6.1E-11
Pfam IPR002083 EMBL-EBI MATH 4.6E-51
Pfam IPR002083 EMBL-EBI MATH 7.1E-52
Pfam IPR002083 EMBL-EBI MATH 1.6E-47
Sequence
Target Sequence 
>C. ELEGANS:182345_AT
gttcacaatcagcgaatctgtccgaaatatctcacgattcgaggatcaggagcaatattc
cacagacacagaaacgcatttcaatattccatgggccctacaaatccggaaaaacaatgg
ttatcttcaattttatttgctctgcgagaaagaagaatgtgaaactagaaaatggtcgat
tgaagttgaatttaaactgaaactggtgtcatacaatgggaagaggttgatgacagattg
tagaagaacgtttgaaaagccgtctgggcttggatccggagacttcttgagctgggagaa
gtttgaaagggaatatgtggttgacgatagtattgtaattgaagcacatgtcaagataat
taaaatgacggatgatccgtgcactgtaaacaaaaatcagaaaatatttctgttgattca
gactgttgaaaatgtttcgagcattgaagaaggaggagattttcacacgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCACAATCAGCGAATCTGTCCGA 141 445 24 Antisense
GGATCAGGAGCAATATTCCACAGAC 304 511 66 Antisense
TTCAATATTCCATGGGCCCTACAAA 449 685 103 Antisense
TCCATGGGCCCTACAAATCCGGAAA 376 589 111 Antisense
AACAATGGTTATCTTCAATTTTATT 97 135 136 Antisense
GAAACTGGTGTCATACAATGGGAAG 670 357 222 Antisense
GAACGTTTGAAAAGCCGTCTGGGCT 481 345 269 Antisense
AAAAGCCGTCTGGGCTTGGATCCGG 315 129 278 Antisense
GATCCGGAGACTTCTTGAGCTGGGA 610 415 296 Antisense
CGGATGATCCGTGCACTGTAAACAA 638 243 392 Antisense
AGAAGGAGGAGATTTTCACACGAGA 433 75 471 Antisense
Sequence Source Affymetrix Proprietary Database