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[182344_at] 7TM chemoreceptor, srab family

Description C36C5.6 /REP_DB=WormBase Gene ID /WP=CE08595 /TR=O16399 /GB=AAB65929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 03      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 30
(-0.8)
A 		1.7
(-3)
A 		14.4
(-2)
A 		80.2
(3)
P 		79
B 38.7
(-0.5)
A 		3.1
(-3)
A 		30.9
(-1)
A 		88.4
(3)
A 		85
C 7.1
(-2.9)
A 		21.2
(-1.1)
A 		6.2
(-3)
A 		52.5
(3)
P 		46
avr 25.3
(-1.5) 		8.7
(-3) 		17.2
(-2.2) 		73.7
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 11
(-2.8)
A 		9.1
(-3)
A 		60
(3)
A 		10.2
(-2.9)
A 		11.4
(-2.7)
A 		37.7
(0.4)
A 		51
B 24.8
(3)
A 		22.2
(2.1)
A 		14.4
(-0.4)
A 		12.9
(-0.9)
A 		6.7
(-3)
A 		18.2
(0.8)
A 		18
C 26.4
(3)
A 		22.4
(1.9)
A 		4.6
(-3)
A 		9.5
(-1.7)
A 		8.8
(-1.8)
A 		13.4
(-0.6)
A 		22
avr 20.7
(1.1) 		17.9
(0.1) 		26.3
(3) 		10.9
(-2.3) 		9
(-3) 		23.1
(1.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.9
(2.6)
A 		0.4
(-3)
A 		3.8
(-1.2)
A 		11.7
(3)
P 		11
B 12.3
(0.8)
A 		0.8
(-3)
A 		7.2
(-0.9)
A 		18.8
(3)
A 		18
C 2.3
(-2.9)
A 		6.1
(0.5)
A 		2.2
(-3)
A 		8.9
(3)
P 		7
avr 8.5
(0.4) 		2.4
(-3) 		4.4
(-1.9) 		13.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-3)
A 		3.3
(-2.3)
A 		13.1
(3)
A 		2.6
(-2.7)
A 		3.4
(-2.2)
A 		9.2
(0.9)
A 		11
B 8.6
(3)
A 		7.4
(1.8)
A 		3.5
(-2.2)
A 		3.4
(-2.3)
A 		2.7
(-3)
A 		6.8
(1.2)
A 		6
C 9.8
(3)
A 		6.8
(0.9)
A 		1.2
(-3)
A 		1.9
(-2.5)
A 		2.8
(-1.9)
A 		4.5
(-0.7)
A 		9
avr 6.8
(3) 		5.8
(1.6) 		5.9
(1.7) 		2.6
(-3) 		3
(-2.4) 		6.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14950
Sequence Type Exemplar sequence
Representative Public ID C36C5.6 NCBI
Target Description C36C5.6 /REP_DB=WormBase Gene ID /WP=CE08595 /TR=O16399 /GB=AAB65929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071461 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-9) (srab-9) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036653 4/11 Cross Hyb Matching Probes None
GENEFINDER00000036678 8/11 Cross Hyb Matching Probes None
C36C5.6 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3139757-3141117(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-9
Entrez Gene 183262 Entrez gene
SwissProt Q8ITZ7 EMBL-EBI
WormBase CE08595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503862 Serpentine Receptor, class AB (class A-like) family member (srab-9) [Caenorhabditis elegans] gb|AAN73876.2| Serpentine receptor, class ab (class a-like) protein 9 [Caenorhabditis elegans] pir||E88989 protein C36C5.6 [imported] - Caenorhabditis elegans 0.0
blast NP_503867 Serpentine Receptor, class AB (class A-like) family member (srab-7) [Caenorhabditis elegans] gb|AAB65933.1| Serpentine receptor, class ab (class a-like) protein 7 [Caenorhabditis elegans] 1.0E-124
blast NP_503866 Serpentine Receptor, class AB (class A-like) family member (srab-6) [Caenorhabditis elegans] gb|AAB65932.1| Serpentine receptor, class ab (class a-like) protein 6 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503862.2 7 24-46,58-80,108-130,143-165,188-210,247-269,274-296
Sequence
Target Sequence 
>C. ELEGANS:182344_AT
gatctgcaagctatgagcacgccgggtgctcacttggaattttacttgcagtcctacagt
tatcaattgcagcatttgccacatatttctcatttatgaggttcaacttttcggagcccg
ttatgaattattgtatggcaataaaaagcggatcggttagtaatgctgagatgatttcga
caattagtcttgtaattcaagtagttgggagaatattattcgagtatttgttcaaattaa
atgagaagcttcgagctaaacagttaacatcaagcctctcaaatcgatacctactcgagc
agaacttaaaatcaatgagaactttgaaacggttcgcagatttacaatccatttttatga
taatccatatgctactattcctttatcttttagagtttggcgtgggatttgaaaaatcca
cgtacatatcgctggtggaattaaatgcctcatatcccctatatgcagtggtatccatcg
tggttttgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTGCAAGCTATGAGCACGCCGG 267 419 410 Antisense
CCGGGTGCTCACTTGGAATTTTACT 500 263 431 Antisense
GAATTTTACTTGCAGTCCTACAGTT 597 323 446 Antisense
GCAGCATTTGCCACATATTTCTCAT 388 313 478 Antisense
AAACAGTTAACATCAAGCCTCTCAA 113 129 667 Antisense
CAAGCCTCTCAAATCGATACCTACT 304 187 680 Antisense
GAAACGGTTCGCAGATTTACAATCC 443 355 735 Antisense
TATGCTACTATTCCTTTATCTTTTA 580 657 777 Antisense
GAATTAAATGCCTCATATCCCCTAT 410 325 847 Antisense
TATCCCCTATATGCAGTGGTATCCA 279 659 862 Antisense
GTGGTATCCATCGTGGTTTTGCTGA 232 489 877 Antisense
Sequence Source Affymetrix Proprietary Database