[Home] | [Total List]

[182343_at]

Description F15A8.7 /REP_DB=WormBase Gene ID /WP=CE09405 /TR=O02150 /GB=AAB52849.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 55.6
(-3)
A 		95.4
(0.5)
A 		123.7
(3)
A 		75.9
(-1.2)
A 		68
B 41
(-3)
A 		122.6
(3)
A 		105.3
(1.7)
A 		55.7
(-1.9)
A 		82
C 70.7
(-3)
A 		94.6
(3)
A 		90.9
(2.1)
A 		73.3
(-2.3)
A 		24
avr 55.8
(-3) 		104.2
(2.7) 		106.6
(3) 		68.3
(-1.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 61.8
(3)
A 		61.7
(3)
A 		51.2
(0.4)
A 		51.9
(0.5)
A 		57.7
(2)
A 		37.7
(-3)
A 		24
B 62.3
(-1.4)
A 		80.1
(1.1)
A 		52
(-2.8)
A 		93.3
(3)
A 		68.3
(-0.5)
A 		50.9
(-3)
A 		42
C 56.8
(-1.6)
A 		72.8
(-0.5)
A 		61.6
(-1.3)
A 		125.2
(3)
A 		79.7
(-0.1)
A 		36.2
(-3)
A 		89
avr 60.3
(-0.7) 		71.5
(0.7) 		54.9
(-1.4) 		90.1
(3) 		68.6
(0.3) 		41.6
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 20.2
(-0.4)
A 		20.7
(-0.3)
A 		32.3
(3)
A 		11.1
(-3)
A 		21
B 13.1
(-2.6)
A 		30.3
(3)
A 		24.4
(1.1)
A 		11.9
(-3)
A 		18
C 23.4
(0.4)
A 		27.2
(1.6)
A 		31.7
(3)
A 		12.4
(-3)
A 		19
avr 18.9
(-0.6) 		26.1
(1.8) 		29.5
(3) 		11.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.4
(-2)
A 		21.9
(3)
A 		11.2
(-2.1)
A 		13.2
(-1.1)
A 		17.4
(0.9)
A 		9.2
(-3)
A 		13
B 21.7
(0.6)
A 		26.7
(2.6)
A 		12.6
(-3)
A 		24.7
(1.8)
A 		27.8
(3)
A 		19
(-0.5)
A 		15
C 21.1
(0.9)
A 		22.2
(1.4)
A 		15.7
(-1.4)
A 		25.2
(2.7)
A 		25.8
(3)
A 		12.1
(-3)
A 		14
avr 18.1
(-0.2) 		23.6
(2.9) 		13.2
(-3) 		21
(1.5) 		23.7
(3) 		13.4
(-2.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16897
Sequence Type Exemplar sequence
Representative Public ID F15A8.7 NCBI
Target Description F15A8.7 /REP_DB=WormBase Gene ID /WP=CE09405 /TR=O02150 /GB=AAB52849.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076363(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076363 NCBI Caenorhabditis elegans F15A8.7 (F15A8.7) mRNA, complete cds. 10/11 None
F15A8.7 ENSEMBL cdna:known chromosome:CEL140:X:4442134:4444121:-1 gene:F15A8.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4442134-4444122(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A8.7
Entrez Gene 180716 Entrez gene
SwissProt O02150 EMBL-EBI
WormBase CE35486 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508764 F15A8.7 [Caenorhabditis elegans] gb|AAB52849.2| Hypothetical protein F15A8.7 [Caenorhabditis elegans] 0.0
blast CAE68595 Hypothetical protein CBG14466 [Caenorhabditis briggsae] 0.0
blast CAB03459 Hypothetical protein W02B8.3 [Caenorhabditis elegans] ref|NP_496915.1| W02B8.3 [Caenorhabditis elegans] 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:182343_AT
ttgccaacctcatcaacttcggagtgtcaatggaagctatggtactgtcacctcatgcct
ttgtatcggagattttacgcccggaagctttgaagcttgacgttctctctcctcgagcat
ttattgcaacagttttgtcaccatctgcgttaattgcacgaatactttccccgacagctt
tccgtgcggaagttctctctccaagagcattgacagcatgggttctctcgccagaagctt
tgattgctgaagtactgactcctagattccttgagccaagagttctctctcccgaggcgt
tggtcatcgatgtgctcagtccaggaattcttgctccacacgtgctatcctccgaagcaa
ttggtgtattatctccccacatcctgggtggccctcatagtcatgaagaggaacatagca
acattgaaatcggatcaggctcccatgaagctcacgcgcatagtgcaactgagcacggag
ctcataaccactcagaacatcatcagcttcatcgctcaattttccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCAACCTCATCAACTTCGGAGT 463 699 773 Antisense
GAAGCTATGGTACTGTCACCTCATG 439 341 805 Antisense
TCACCTCATGCCTTTGTATCGGAGA 96 627 820 Antisense
GAGATTTTACGCCCGGAAGCTTTGA 5 397 841 Antisense
TTCTCTCTCCTCGAGCATTTATTGC 447 691 875 Antisense
GCAACAGTTTTGTCACCATCTGCGT 411 311 898 Antisense
ACTGACTCCTAGATTCCTTGAGCCA 195 97 1026 Antisense
CTCAGTCCAGGAATTCTTGCTCCAC 65 229 1087 Antisense
GCAATTGGTGTATTATCTCCCCACA 582 323 1129 Antisense
TCCTGGGTGGCCCTCATAGTCATGA 661 593 1154 Antisense
TCAGCTTCATCGCTCAATTTTCCAT 252 625 1275 Antisense
Sequence Source Affymetrix Proprietary Database