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[182342_at]

Description F47F2.2 /REP_DB=WormBase Gene ID /WP=CE04604 /TR=Q20540 /GB=AAK39234.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 32.6
(1.2)
A 		42.6
(3)
A 		9.4
(-3)
A 		36
(1.8)
A 		33
B 16.7
(-2.4)
A 		68.1
(2.7)
A 		11.1
(-3)
A 		70.6
(3)
A 		60
C 17.6
(-3)
A 		46.8
(-0.3)
A 		28
(-2.1)
A 		83.6
(3)
A 		66
avr 22.3
(-2.2) 		52.5
(1.6) 		16.2
(-3) 		63.4
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 12.9
(-3)
A 		17.7
(-1.3)
A 		18.5
(-1)
A 		20.5
(-0.3)
A 		29.6
(3)
A 		23.3
(0.7)
A 		17
B 58.1
(3)
A 		14.3
(-2.2)
A 		9.4
(-2.7)
A 		7.1
(-3)
A 		15.7
(-2)
A 		10.8
(-2.6)
A 		51
C 27.9
(0.2)
A 		11.6
(-1.8)
A 		1.8
(-3)
A 		51.5
(3)
A 		23.2
(-0.4)
A 		11.6
(-1.8)
A 		50
avr 33
(3) 		14.5
(-1.8) 		9.9
(-3) 		26.4
(1.3) 		22.8
(0.4) 		15.2
(-1.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.9
(3)
A 		9.2
(1.3)
A 		2.5
(-3)
A 		5.3
(-1.2)
A 		9
B 5.3
(-1.9)
A 		16.8
(3)
A 		2.6
(-3)
A 		15
(2.2)
A 		14
C 5.8
(-3)
A 		13.4
(2.5)
A 		9.8
(-0.1)
A 		14.1
(3)
A 		8
avr 7.7
(-1) 		13.1
(3) 		5
(-3) 		11.5
(1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.4
(-3)
A 		6.3
(0.6)
A 		4
(-1.5)
A 		5.2
(-0.4)
A 		8.9
(3)
A 		5.7
(0)
A 		7
B 20.2
(3)
A 		4.8
(-2)
A 		2.3
(-2.9)
A 		1.9
(-3)
A 		6.4
(-1.5)
A 		4
(-2.3)
A 		18
C 10.4
(3)
A 		3.5
(-1.2)
A 		0.5
(-3)
A 		10.3
(2.9)
A 		7.5
(1.2)
A 		3.9
(-0.9)
A 		10
avr 11
(3) 		4.9
(-1.2) 		2.3
(-3) 		5.8
(-0.6) 		7.6
(0.7) 		4.5
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18169
Sequence Type Exemplar sequence
Representative Public ID F47F2.2 NCBI
Target Description F47F2.2 /REP_DB=WormBase Gene ID /WP=CE04604 /TR=Q20540 /GB=AAK39234.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076269 NCBI Caenorhabditis elegans F47F2.2 (F47F2.2) mRNA, complete cds. 11/11 None
F47F2.2 ENSEMBL cdna:known chromosome:CEL140:X:3885420:3887539:-1 gene:F47F2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3885420-3887540(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47F2.2
Entrez Gene 185940 Entrez gene
SwissProt Q20540 EMBL-EBI
WormBase CE04604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39234 Hypothetical protein F47F2.2 [Caenorhabditis elegans] ref|NP_508670.1| F47F2.2 [Caenorhabditis elegans] 3.0E-29
Sequence
Target Sequence 
>C. ELEGANS:182342_AT
ttttttatggtggagacgccgccgccgcgcatatgtctttttccagtggtagtggtggtg
cgtgcgacgaagccgtgagaaataatgacgcgcgcgccgcgttcaatcttcacatcaacc
cgcaatatatgtatacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTTATGGTGGAGACGCCGCCGC 7 675 26 Antisense
GCGCATATGTCTTTTTCCAGTGGTA 35 289 52 Antisense
GCATATGTCTTTTTCCAGTGGTAGT 433 307 54 Antisense
GTCTTTTTCCAGTGGTAGTGGTGGT 589 445 60 Antisense
TGGTAGTGGTGGTGCGTGCGACGAA 601 551 72 Antisense
TAGTGGTGGTGCGTGCGACGAAGCC 363 653 75 Antisense
GTGCGTGCGACGAAGCCGTGAGAAA 21 479 83 Antisense
GCCGTGAGAAATAATGACGCGCGCG 634 283 97 Antisense
AGAAATAATGACGCGCGCGCCGCGT 146 73 103 Antisense
TCTTCACATCAACCCGCAATATATG 191 617 132 Antisense
CATCAACCCGCAATATATGTATACG 576 211 138 Antisense
Sequence Source Affymetrix Proprietary Database