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[182340_at]

Description F52D2.6 /REP_DB=WormBase Gene ID /WP=CE20842 /TR=Q9TXM3 /GB=AAC78158.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      6grp_total > 49      4grp_total > 44      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 102.4
(0.1)
A 		151.5
(3)
P 		49.7
(-3)
A 		53.2
(-2.8)
A 		102
B 66.5
(-1.3)
A 		106.2
(3)
A 		87.1
(0.9)
A 		50.5
(-3)
A 		56
C 120.2
(3)
A 		113
(2)
A 		113.6
(2.1)
A 		78.1
(-3)
A 		42
avr 96.4
(0.4) 		123.6
(3) 		83.5
(-0.8) 		60.6
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 102.5
(-2)
A 		141.3
(-0.3)
P 		80.3
(-3)
A 		166.1
(0.9)
P 		163.2
(0.7)
P 		213.9
(3)
P 		134
B 117
(3)
P 		116
(2.8)
A 		115.9
(2.8)
P 		90
(-1.1)
A 		77.2
(-3)
A 		104.1
(1.1)
P 		40
C 218.5
(3)
P 		75.5
(-2.8)
A 		150.1
(0.2)
M 		71.4
(-3)
P 		187.9
(1.8)
P 		142.1
(-0.1)
P 		147
avr 146
(2) 		110.9
(-2.8) 		115.4
(-2.2) 		109.2
(-3) 		142.8
(1.6) 		153.4
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 37.3
(3)
A 		32.9
(2.1)
P 		13
(-1.9)
A 		7.8
(-3)
A 		30
B 21.2
(1.1)
A 		26.2
(3)
A 		20.2
(0.7)
A 		10.8
(-3)
A 		15
C 39.8
(3)
A 		32.5
(1.4)
A 		39.6
(3)
A 		13.2
(-3)
A 		27
avr 32.8
(3) 		30.5
(2.4) 		24.3
(0.7) 		10.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 18.9
(-2.8)
A 		50.2
(2.7)
P 		17.5
(-3)
A 		42.1
(1.3)
P 		49.3
(2.5)
P 		52.1
(3)
P 		35
B 40.7
(3)
P 		38.6
(2.3)
A 		28.1
(-1.5)
P 		23.8
(-3)
A 		31.4
(-0.3)
A 		38.8
(2.3)
P 		17
C 81
(3)
P 		23
(-2.2)
A 		38.2
(-0.9)
M 		14.4
(-3)
P 		60.8
(1.2)
P 		47.6
(-0)
P 		67
avr 46.9
(2.9) 		37.3
(0.1) 		27.9
(-2.7) 		26.8
(-3) 		47.2
(3) 		46.2
(2.7) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18181
Sequence Type Exemplar sequence
Representative Public ID F52D2.6 NCBI
Target Description F52D2.6 /REP_DB=WormBase Gene ID /WP=CE20842 /TR=Q9TXM3 /GB=AAC78158.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075964 NCBI Caenorhabditis elegans F52D2.6 (F52D2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000016864 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1975128:1980507:1 11/11 None
SNAP00000016859 ENSEMBL cdna:SNAP chromosome:CEL140:X:1975950:1980507:1 11/11 None
F52D2.6 ENSEMBL cdna:known chromosome:CEL140:X:1974907:1980931:1 gene:F52D2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1974906-1980507(+) 98.57 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D2.6
Entrez Gene 186105 Entrez gene
SwissProt Q9TXM3 EMBL-EBI
WormBase CE20842 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78158 Hypothetical protein F52D2.6 [Caenorhabditis elegans] ref|NP_508365.1| F52D2.6 [Caenorhabditis elegans] 0.0
blast AAC78155 Gex interacting protein protein 12 [Caenorhabditis elegans] ref|NP_508367.1| GEX Interacting protein family member (gei-12) [Caenorhabditis elegans] 9.0E-97
blast AAC78155 Gex interacting protein protein 12 [Caenorhabditis elegans] ref|NP_508367.1| GEX Interacting protein family member (gei-12) [Caenorhabditis elegans] 1.0E-96
blast NP_508310 C36C9.1 [Caenorhabditis elegans] gb|AAC67424.1| Hypothetical protein C36C9.1 [Caenorhabditis elegans] 5.0E-92
blast NP_508310 C36C9.1 [Caenorhabditis elegans] gb|AAC67424.1| Hypothetical protein C36C9.1 [Caenorhabditis elegans] 6.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016864 1 177-199
Sequence
Target Sequence 
>C. ELEGANS:182340_AT
atccgaccgaagattgctcgcaagatccagattcaacttcgccaccaccacgcatttctg
aaagcttgacagcattcctggtagctcagcaagatttcaatgactacattaatacgaact
acaaagataaggctcacatcttgaaagtgaatctgaatattcacgaaatgtcgcctgtca
aatggctgtacttgaattacttctgcatcgagacaaatccaagattgaatggcccttatg
tcatagatccaagggttccacttgtgcgaaatatgttcagaagatggttccaccgcaatg
ctgaatcctgcttcaaaaatcctggcaagcttgcgattctgcaagggacggctagcaaat
ttgtgcaatatcagctacgcatttctcaaaacggagcgaattcttccacgaactctacca
tcatgttttacacattgtgggaggaatgtataggacagaaaaatatcatttctataatcg
acgcgtgcctgcttgcacaccttcacactacagatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGACCGAAGATTGCTCGCAAGA 262 39 1952 Antisense
CAAGATCCAGATTCAACTTCGCCAC 41 185 1972 Antisense
ATGTCGCCTGTCAAATGGCTGTACT 22 49 2119 Antisense
GAATGGCCCTTATGTCATAGATCCA 534 333 2178 Antisense
GATGGTTCCACCGCAATGCTGAATC 671 407 2234 Antisense
AATCCTGGCAAGCTTGCGATTCTGC 642 167 2269 Antisense
TGCGATTCTGCAAGGGACGGCTAGC 369 583 2283 Antisense
GTGCAATATCAGCTACGCATTTCTC 543 481 2314 Antisense
TTCCACGAACTCTACCATCATGTTT 606 699 2355 Antisense
ATTTCTATAATCGACGCGTGCCTGC 53 17 2419 Antisense
TGCACACCTTCACACTACAGATATG 71 577 2445 Antisense
Sequence Source Affymetrix Proprietary Database