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[182339_at]

Description K09H9.5 /REP_DB=WormBase Gene ID /WP=CE18040 /TR=O44990 /GB=AAB97572.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 12      4grp_high_8_8 > 38      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 33      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 601
1 2 3 4 range
A 515.1
(-3)
P 		696.2
(0.3)
P 		843.3
(3)
P 		688.4
(0.2)
P 		328
B 528.8
(-3)
P 		910.4
(0.9)
P 		918.5
(1)
P 		1115.8
(3)
P 		587
C 605.2
(-3)
P 		972
(3)
P 		911.6
(2)
P 		767.4
(-0.3)
P 		367
avr 549.7
(-3) 		859.5
(2.4) 		891.1
(3) 		857.2
(2.4) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 578
1 2 3 4 5 6 range
A 545.2
(0.6)
P 		750.5
(3)
P 		693
(2.3)
P 		573.6
(0.9)
P 		430.3
(-0.8)
P 		245.9
(-3)
P 		505
B 667.8
(1.4)
P 		815.5
(3)
P 		496.5
(-0.6)
P 		544.8
(-0)
P 		497.9
(-0.5)
P 		276.7
(-3)
P 		539
C 736.4
(2.8)
P 		756.1
(3)
P 		632.9
(1.6)
P 		486.5
(-0.1)
P 		420.7
(-0.9)
P 		237.5
(-3)
P 		519
avr 649.8
(1.6) 		774
(3) 		607.5
(1.1) 		535
(0.2) 		449.6
(-0.7) 		253.4
(-3) 		521
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 187.6
(1.4)
P 		151.1
(-0.5)
P 		220.5
(3)
P 		100.8
(-3)
P 		120
B 168.6
(-3)
P 		224.8
(1.9)
P 		212.8
(0.8)
P 		237.8
(3)
P 		69
C 200.3
(-0.7)
P 		279.4
(1.8)
P 		317.7
(3)
P 		129.4
(-3)
P 		188
avr 185.5
(-1.1) 		218.4
(1) 		250.3
(3) 		156
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 100.5
(-1.8)
P 		266.9
(3)
P 		150.9
(-0.4)
P 		145.5
(-0.5)
P 		129.9
(-1)
P 		59.9
(-3)
P 		207
B 232.4
(1.6)
P 		271.4
(3)
P 		120.6
(-2.4)
P 		144.3
(-1.5)
P 		202.3
(0.5)
P 		103.2
(-3)
P 		168
C 273
(3)
P 		230.7
(1.7)
P 		161.1
(-0.5)
P 		97.8
(-2.4)
P 		136.1
(-1.2)
P 		79.5
(-3)
P 		194
avr 202
(1.1) 		256.3
(3) 		144.2
(-0.8) 		129.2
(-1.3) 		156.1
(-0.4) 		80.9
(-3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.47
Sequence Type Exemplar sequence
Representative Public ID K09H9.5 NCBI
Target Description K09H9.5 /REP_DB=WormBase Gene ID /WP=CE18040 /TR=O44990 /GB=AAB97572.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058706 NCBI Caenorhabditis elegans K09H9.5a (K09H9.5) mRNA, complete cds. 11/11 None
SNAP00000035322 ENSEMBL cdna:SNAP chromosome:CEL140:I:3134942:3143169:-1 9/11 None
GENEFINDER00000035334 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3138598:3140568:-1 9/11 None
K09H9.5a ENSEMBL cdna:known chromosome:CEL140:I:3138598:3143169:-1 gene:K09H9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
187241 2 1 NM_058706 182339_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3139326-3143169(-) 100.0 100.0
Public Domain and Genome References
Ensembl K09H9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491107 K09H9.5a [Caenorhabditis elegans] gb|AAB97572.2| Hypothetical protein K09H9.5a [Caenorhabditis elegans] 0.0
blast NP_871872 K09H9.5b [Caenorhabditis elegans] gb|AAO12406.1| Hypothetical protein K09H9.5b [Caenorhabditis elegans] 1.0E-98
blast CAE60554 Hypothetical protein CBG04181 [Caenorhabditis briggsae] 4.0E-93
blast NP_871872 K09H9.5b [Caenorhabditis elegans] gb|AAO12406.1| Hypothetical protein K09H9.5b [Caenorhabditis elegans] 1.0E-82
blast NP_491107 K09H9.5a [Caenorhabditis elegans] gb|AAB97572.2| Hypothetical protein K09H9.5a [Caenorhabditis elegans] 1.0E-82
blast NP_491107 K09H9.5a [Caenorhabditis elegans] gb|AAB97572.2| Hypothetical protein K09H9.5a [Caenorhabditis elegans] 2.0E-79
blast CAE60554 Hypothetical protein CBG04181 [Caenorhabditis briggsae] 3.0E-70
blast CAE60554 Hypothetical protein CBG04181 [Caenorhabditis briggsae] 2.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491107.2 3 279-301,314-336,358-380
K09H9.5a 3 279-301,314-336,358-380
SNAP00000035322 3 194-216,229-251,273-295
GENEFINDER00000035334 4 40-62,66-85,98-120,142-164
Sequence
Target Sequence 
>C. ELEGANS:182339_AT
tggtcccttgcgtgttttcacgaattaaatgcttccaaagtgcttcttctcctggaaata
tttcttgtaatccccatctacatgcttttcctgttcccatggtggctcatgtggattggt
ttccatctcgttctcattttagtcacaatatatgctctccgtaaaaagaagcatcgattc
atgtggccaatggtgttgtttacgctctctcaatttcttatctggggattattaaccgtt
attcaactcttgatcgcctttttcgacacccaatcattcctgaacttctactctcaagga
catcatgaagagttcttcgaaaaagcattggtggtgatagttgtgaaattgttagtcttc
gcgatcggagcttttctgttttggcgattttcagtctactacgcaaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCCCTTGCGTGTTTTCACGAAT 75 501 757 Antisense
AAATGCTTCCAAAGTGCTTCTTCTC 268 119 783 Antisense
AATATTTCTTGTAATCCCCATCTAC 626 173 813 Antisense
TCCATCTCGTTCTCATTTTAGTCAC 111 591 878 Antisense
CGCTCTCTCAATTTCTTATCTGGGG 630 255 959 Antisense
TTCAACTCTTGATCGCCTTTTTCGA 571 683 998 Antisense
CACCCAATCATTCCTGAACTTCTAC 97 199 1023 Antisense
GAACTTCTACTCTCAAGGACATCAT 128 351 1038 Antisense
TTAGTCTTCGCGATCGGAGCTTTTC 229 665 1108 Antisense
GAGCTTTTCTGTTTTGGCGATTTTC 72 389 1124 Antisense
GATTTTCAGTCTACTACGCAACCAA 440 429 1142 Antisense
Sequence Source Affymetrix Proprietary Database