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[182338_at]

Description T05E7.1 /REP_DB=WormBase Gene ID /WP=CE13231 /TR=O01862 /GB=AAB54213.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 72      4grp_high_8_8 > 62      6grp_highest_nonorm > 62      6grp_total > 72      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 695
1 2 3 4 range
A 229.8
(-1.3)
P 		516.1
(1.7)
P 		645
(3)
P 		64.9
(-3)
P 		580
B 299.4
(-0.6)
P 		368.9
(-0)
P 		714
(3)
P 		27.8
(-3)
A 		686
C 229.3
(-1.5)
P 		447.7
(0.5)
P 		722.3
(3)
P 		71.8
(-3)
P 		651
avr 252.8
(-1.1) 		444.2
(0.7) 		693.8
(3) 		54.8
(-3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 618
1 2 3 4 5 6 range
A 211.8
(-3)
P 		269.9
(-2.4)
P 		724.3
(2)
P 		829.8
(3)
P 		415.8
(-1)
P 		250.2
(-2.6)
P 		618
B 232.5
(-3)
P 		290
(-2.4)
P 		820.8
(3)
P 		745.7
(2.2)
P 		579.5
(0.5)
P 		292.1
(-2.4)
P 		588
C 216.9
(-3)
P 		240.6
(-2.7)
P 		660.4
(2.6)
P 		691.3
(3)
P 		548.1
(1.2)
P 		319.4
(-1.7)
P 		474
avr 220.4
(-3) 		266.8
(-2.5) 		735.2
(2.8) 		755.6
(3) 		514.5
(0.3) 		287.2
(-2.3) 		535
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 83.7
(-0.2)
P 		112
(0.9)
P 		168.6
(3)
P 		9.5
(-3)
P 		159
B 95.5
(0.4)
P 		91.1
(0.2)
P 		165.5
(3)
P 		5.9
(-3)
A 		160
C 75.9
(-1.4)
P 		128.7
(-0.1)
P 		251.7
(3)
P 		12.1
(-3)
P 		240
avr 85
(-0.6) 		110.6
(0.3) 		195.3
(3) 		9.2
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 39
(-3)
P 		96
(-1)
P 		157.7
(1.2)
P 		210.5
(3)
P 		125.5
(0)
P 		60.9
(-2.2)
P 		172
B 80.9
(-3)
P 		96.5
(-2.4)
P 		199.3
(1.6)
P 		197.5
(1.5)
P 		235.4
(3)
P 		108.9
(-1.9)
P 		155
C 80.4
(-2.6)
P 		73.4
(-3)
P 		168.1
(2.5)
P 		139
(0.8)
P 		177.4
(3)
P 		106.9
(-1.1)
P 		104
avr 66.8
(-3) 		88.6
(-1.9) 		175
(2.6) 		182.3
(3) 		179.4
(2.8) 		92.2
(-1.7) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1489
Sequence Type Exemplar sequence
Representative Public ID T05E7.1 NCBI
Target Description T05E7.1 /REP_DB=WormBase Gene ID /WP=CE13231 /TR=O01862 /GB=AAB54213.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059387 NCBI Caenorhabditis elegans T05E7.1 (T05E7.1) mRNA, complete cds. 11/11 None
SNAP00000044428 ENSEMBL cdna:SNAP chromosome:CEL140:I:6212149:6215019:1 11/11 None
GENEFINDER00000044430 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6212149:6215019:1 11/11 None
T05E7.1 ENSEMBL cdna:known chromosome:CEL140:I:6212032:6215051:1 gene:T05E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6211960-6214948(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E7.1
Entrez Gene 172309 Entrez gene
SwissProt O01862 EMBL-EBI
WormBase CE13231 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16290 palmitoyl-CoA hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54213 Hypothetical protein T05E7.1 [Caenorhabditis elegans] ref|NP_491788.1| T05E7.1 [Caenorhabditis elegans] 0.0
blast CAE67136 Hypothetical protein CBG12559 [Caenorhabditis briggsae] 0.0
blast CAE65484 Hypothetical protein CBG10451 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 4.19999980926514
Pfam IPR006862 EMBL-EBI Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase 1.8E-103
Pfam IPR006862 EMBL-EBI Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase 1.4E-104
Sequence
Target Sequence 
>C. ELEGANS:182338_AT
atcatcaagtgtctgcagttgttgcattgaattgttcagcagcattttgtagagataatg
cagttatgaaagaaaatggaaaaccaatggaaacacaaattttagatgaaggaatgtcgg
attttgtgaatcaagttttacgccaaaaaccagcattcagagatttgtatagcaatttga
caccgacaacaagtattccatgggcaagagcacccaagaacacagcttatagaattgtgc
aatgctacgatgacatgcttgtggatgcagttccatcgattattaatatttgtggaaacc
ttagaaagaccggacatcatgttgagtctgaacttgttcccggtggtcatttcctttatt
ttccatatttcccccaccacggaatcatctacaatgctcaaataaatatgttatggggat
tcggtggagaatgttatcaacattcaaaatcacaagaaacgacctggaaaaagaacgttg
aattcttcaagaagcatcttggtgacgtaaagagaattccagaatggaaaagagaaagta
cagtaaccctcccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATCAAGTGTCTGCAGTTGTTGC 171 31 842 Antisense
GAATTGTTCAGCAGCATTTTGTAGA 689 323 870 Antisense
TTACGCCAAAAACCAGCATTCAGAG 203 683 979 Antisense
GACACCGACAACAAGTATTCCATGG 611 367 1020 Antisense
GCAAGAGCACCCAAGAACACAGCTT 312 321 1045 Antisense
GCAATGCTACGATGACATGCTTGTG 30 323 1080 Antisense
ATGCTTGTGGATGCAGTTCCATCGA 451 41 1096 Antisense
AGACCGGACATCATGTTGAGTCTGA 272 71 1148 Antisense
TTGAGTCTGAACTTGTTCCCGGTGG 455 703 1163 Antisense
GGTGGTCATTTCCTTTATTTTCCAT 477 499 1183 Antisense
GAGAAAGTACAGTAACCCTCCCAGT 139 391 1373 Antisense
Sequence Source Affymetrix Proprietary Database