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[182337_at]

Description Y44A6C.2 /REP_DB=WormBase Gene ID /WP=CE18389 /TR=O62453 /GB=CAA16370.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 29.6
(-2.2)
A 		34.4
(-1.8)
A 		19.3
(-3)
A 		92.1
(3)
A 		73
B 49.3
(3)
A 		20.1
(-2.8)
A 		19.3
(-3)
A 		36.7
(0.5)
A 		30
C 45.3
(1.4)
A 		27.3
(-0.5)
A 		3.7
(-3)
A 		59.9
(3)
A 		56
avr 41.4
(0.4) 		27.3
(-1.4) 		14.1
(-3) 		62.9
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 14.1
(-2.5)
A 		4.6
(-3)
A 		68
(0.6)
A 		9.2
(-2.7)
A 		54.3
(-0.2)
A 		110.9
(3)
A 		106
B 50.1
(1.6)
A 		33
(-0.2)
A 		11.4
(-2.4)
A 		5
(-3)
A 		19.1
(-1.6)
A 		64.4
(3)
A 		59
C 12.6
(-2.3)
A 		51.5
(2.7)
A 		34.8
(0.6)
A 		37.3
(0.9)
A 		6.9
(-3)
A 		53.5
(3)
A 		47
avr 25.6
(-2.1) 		29.7
(-1.7) 		38.1
(-0.9) 		17.2
(-3) 		26.8
(-2) 		76.3
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.8
(1.1)
A 		7.5
(-1.2)
A 		5
(-3)
A 		13.5
(3)
A 		9
B 15.7
(3)
A 		5
(-2.7)
A 		4.5
(-3)
A 		7.8
(-1.2)
A 		11
C 15
(3)
A 		7.8
(-0.2)
A 		1.3
(-3)
A 		10.1
(0.9)
A 		14
avr 13.8
(3) 		6.8
(-1.1) 		3.6
(-3) 		10.5
(1.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.6
(-2.8)
A 		1.6
(-3)
A 		14.8
(0.1)
A 		2.3
(-2.8)
A 		16.4
(0.5)
A 		27
(3)
A 		25
B 17.4
(1.3)
A 		11
(-0.4)
A 		2.8
(-2.6)
A 		1.3
(-3)
A 		7.7
(-1.3)
A 		24
(3)
A 		23
C 4.7
(-2)
A 		15.7
(2.2)
A 		8.9
(-0.4)
A 		7.5
(-1)
A 		2.2
(-3)
A 		17.9
(3)
A 		16
avr 8.2
(-1.6) 		9.4
(-1.2) 		8.8
(-1.4) 		3.7
(-3) 		8.8
(-1.4) 		23
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13297
Sequence Type Exemplar sequence
Representative Public ID Y44A6C.2 NCBI
Target Description Y44A6C.2 /REP_DB=WormBase Gene ID /WP=CE18389 /TR=O62453 /GB=CAA16370.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075600 NCBI Caenorhabditis elegans Y44A6C.2 (Y44A6C.2) mRNA, complete cds. 11/11 None
Y44A6C.2 ENSEMBL cdna:known chromosome:CEL140:V:20720292:20721783:1 gene:Y44A6C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20720442-20721640(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y44A6C.2
Entrez Gene 180355 Entrez gene
SwissProt O62453 EMBL-EBI
WormBase CE18389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16370 Hypothetical protein Y44A6C.2 [Caenorhabditis elegans] ref|NP_508001.1| Y44A6C.2 [Caenorhabditis elegans] 0.0
blast CAB07200 Hypothetical protein F31E9.4 [Caenorhabditis elegans] ref|NP_507386.1| F31E9.4 [Caenorhabditis elegans] 1.0E-52
blast CAB63435 Hypothetical protein C38D9.8 [Caenorhabditis elegans] ref|NP_507446.1| C38D9.8 [Caenorhabditis elegans] 9.0E-49
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 2.29999995231628
Sequence
Target Sequence 
>C. ELEGANS:182337_AT
aaatgttccaactcgactatctgtcagtgacccactccgattggatggtaccatcggatc
tcgaggaaatggagaacaagatcgtctatctcgacaaaagcgatttctacgactcggata
tgaaccaattcctgcgagaactcaaaagcggatcatctcacagtcgactccagattctat
cgatccaaggcaactcgtggcaaaactactgggatccatcggatgtgctggagggcctta
acgccgagctatggaaccaaacggagagaaatcagcattactttcttaatgccgagcatc
gaaagaatttcaaaaagatcgcggatcacttctatccagatcaagaggacggttttggag
cagaactggagcacggcgtcgacttatcagaagctttcgattttctcaagaacgatggta
ctcgggtcagcgtacgatttgatgagttgattcttcaagttttcgtgtggccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTTCCAACTCGACTATCTGTC 519 119 476 Antisense
GTGACCCACTCCGATTGGATGGTAC 209 481 502 Antisense
GGATGGTACCATCGGATCTCGAGGA 132 515 518 Antisense
AAAGCGGATCATCTCACAGTCGACT 286 125 620 Antisense
GTCGACTCCAGATTCTATCGATCCA 129 475 638 Antisense
TCGGATGTGCTGGAGGGCCTTAACG 676 605 694 Antisense
GGCCTTAACGCCGAGCTATGGAACC 198 537 709 Antisense
GATCGCGGATCACTTCTATCCAGAT 383 417 792 Antisense
AGCACGGCGTCGACTTATCAGAAGC 216 73 845 Antisense
GAACGATGGTACTCGGGTCAGCGTA 650 345 885 Antisense
GATTCTTCAAGTTTTCGTGTGGCCC 681 429 924 Antisense
Sequence Source Affymetrix Proprietary Database