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[182336_at]

Description C54D10.5 /REP_DB=WormBase Gene ID /WP=CE05501 /TR=Q18828 /GB=CAA99800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 23      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 443.2
(3)
P 		306.2
(-1.1)
P 		244.8
(-3)
P 		403.1
(1.8)
P 		198
B 476.1
(3)
P 		256.3
(-3)
P 		256.9
(-3)
P 		410.2
(1.2)
P 		220
C 503.4
(3)
P 		296.8
(-1.7)
P 		240.2
(-3)
P 		483.5
(2.5)
P 		263
avr 474.2
(3) 		286.4
(-2) 		247.3
(-3) 		432.3
(1.9) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 432.5
(3)
P 		229.3
(-2.3)
P 		270.7
(-1.2)
P 		287.7
(-0.8)
P 		244.7
(-1.9)
P 		202.1
(-3)
P 		230
B 336.6
(3)
P 		305.7
(1.4)
P 		269.3
(-0.6)
P 		242.9
(-2)
P 		243.1
(-2)
P 		223.9
(-3)
P 		113
C 319.9
(1.8)
P 		355.3
(3)
P 		236.1
(-0.9)
P 		304.5
(1.3)
P 		172.2
(-3)
P 		197.6
(-2.2)
P 		183
avr 363
(3) 		296.8
(0.4) 		258.7
(-1) 		278.4
(-0.3) 		220
(-2.5) 		207.9
(-3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 161.4
(3)
P 		66.5
(-2.6)
P 		64
(-2.7)
P 		59
(-3)
P 		102
B 151.8
(3)
P 		63.3
(-2.8)
P 		59.5
(-3)
P 		87.4
(-1.2)
P 		92
C 166.6
(3)
P 		85.3
(-2.7)
P 		83.7
(-2.8)
P 		81.5
(-3)
P 		85
avr 159.9
(3) 		71.7
(-2.8) 		69.1
(-3) 		76
(-2.5) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 79.7
(2.6)
P 		81.6
(3)
P 		58.9
(-1.2)
P 		73
(1.4)
P 		73.8
(1.6)
P 		49.2
(-3)
P 		32
B 117.1
(3)
P 		101.8
(1.3)
P 		65.4
(-2.9)
P 		64.3
(-3)
P 		98.8
(0.9)
P 		83.5
(-0.8)
P 		53
C 118.6
(3)
P 		108.4
(2)
P 		60.1
(-2.6)
P 		61.2
(-2.5)
P 		55.7
(-3)
P 		66.2
(-2)
P 		63
avr 105.1
(3) 		97.3
(1.9) 		61.5
(-3) 		66.2
(-2.4) 		76.1
(-1) 		66.3
(-2.3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14648
Sequence Type Exemplar sequence
Representative Public ID C54D10.5 NCBI
Target Description C54D10.5 /REP_DB=WormBase Gene ID /WP=CE05501 /TR=Q18828 /GB=CAA99800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073717 NCBI Caenorhabditis elegans C54D10.5 (C54D10.5) mRNA, complete cds. 11/11 None
SNAP00000038020 ENSEMBL cdna:SNAP chromosome:CEL140:V:12431945:12433784:1 11/11 None
GENEFINDER00000038029 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12431945:12433784:1 11/11 None
C54D10.5 ENSEMBL cdna:known chromosome:CEL140:V:12431945:12433784:1 gene:C54D10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12431944-12433784(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54D10.5
Entrez Gene 183782 Entrez gene
SwissProt Q18828 EMBL-EBI
WormBase CE05501 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99800 Hypothetical protein C54D10.5 [Caenorhabditis elegans] ref|NP_506118.1| C54D10.5 [Caenorhabditis elegans] 0.0
blast CAE75484 Hypothetical protein CBG23488 [Caenorhabditis briggsae] 0.0
blast CAE72042 Hypothetical protein CBG19124 [Caenorhabditis briggsae] 7.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506118.1 7 34-56,69-91,111-133,159-181,214-236,293-315,340-362
C54D10.5 7 34-56,69-91,111-133,159-181,214-236,293-315,340-362
SNAP00000038020 7 34-56,69-91,111-133,159-181,214-236,293-315,340-362
GENEFINDER00000038029 7 34-56,69-91,111-133,159-181,214-236,293-315,340-362
Sequence
Target Sequence 
>C. ELEGANS:182336_AT
gagtatccgaaatgtcctgacttttttagaacaaaaactacaaatccaagagaatgggca
cttgaaagccagctctaccatttctttgattttcaagtaatgacaattgctcaaacactt
gttccatttgttttgctagttggattaaacttgattattgttcgaagaatgtgctcagat
agtgttcaaaaggaaaaactaccagaacctacggaagtttgtttcaaggaagatcggcta
cttactcaaatcactccagttcataagtcatctacaacaattggtctatcgttcccgcct
ctcaaaagcatgtcaccagcggttagaagtgctgtatttaccatggcagctatcgtaaca
tcatatctaatctctaacattcttcatctcagcttgacagttcttgaaagatctggtcat
caaatactaaagtcagaggaggatccacaaatgtcttccacatttcacacattcttctcc
gatttggtttcattcgtttacatgtttacttctgctatccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTATCCGAAATGTCCTGACTTTT 483 397 559 Antisense
GGGCACTTGAAAGCCAGCTCTACCA 192 493 614 Antisense
CAGCTCTACCATTTCTTTGATTTTC 410 203 628 Antisense
TCGGCTACTTACTCAAATCACTCCA 580 605 792 Antisense
ACAACAATTGGTCTATCGTTCCCGC 141 111 832 Antisense
CGCCTCTCAAAAGCATGTCACCAGC 554 257 854 Antisense
ATCTCTAACATTCTTCATCTCAGCT 281 33 928 Antisense
GGAGGATCCACAAATGTCTTCCACA 153 517 996 Antisense
ATGTCTTCCACATTTCACACATTCT 315 49 1009 Antisense
CACACATTCTTCTCCGATTTGGTTT 132 195 1024 Antisense
TTACATGTTTACTTCTGCTATCCGA 375 683 1056 Antisense
Sequence Source Affymetrix Proprietary Database