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[182335_at]

Description F17A2.13 /REP_DB=WormBase Gene ID /WP=CE03222 /TR=Q19510 /GB=CAA92157.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 22      6grp_total > 44      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 90.4
(-3)
A 		93.1
(-2.8)
A 		111.4
(-1.6)
A 		181.8
(3)
P 		91
B 90.4
(-1.1)
P 		134.3
(3)
A 		119.6
(1.6)
A 		70.5
(-3)
P 		64
C 109.7
(-3)
P 		115.9
(-2.4)
P 		113.3
(-2.7)
P 		172.9
(3)
P 		63
avr 96.8
(-3) 		114.4
(-0.6) 		114.8
(-0.6) 		141.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 96.2
(3)
A 		41.8
(-3)
A 		90.8
(2.4)
P 		76.3
(0.8)
A 		90.1
(2.3)
P 		81.5
(1.4)
P 		54
B 81.6
(-0.7)
P 		115
(2.1)
A 		94.1
(0.3)
A 		54.5
(-3)
P 		126.2
(3)
P 		105.7
(1.3)
P 		72
C 117.5
(3)
P 		89.5
(-0.7)
P 		112.5
(2.3)
P 		108
(1.7)
P 		72.5
(-3)
A 		92.3
(-0.4)
P 		45
avr 98.4
(2.8) 		82.1
(-2.2) 		99.1
(3) 		79.6
(-3) 		96.3
(2.1) 		93.2
(1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 32.9
(3)
A 		20.2
(-3)
A 		29.1
(1.2)
A 		26.6
(0)
P 		13
B 28.8
(1.5)
P 		33.2
(3)
A 		27.7
(1.2)
A 		15
(-3)
P 		18
C 36.3
(1.1)
P 		33.3
(-0.6)
P 		39.5
(3)
P 		29.2
(-3)
P 		10
avr 32.7
(3) 		28.9
(0.5) 		32.1
(2.6) 		23.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 17.7
(-1.6)
A 		14.9
(-3)
A 		19.8
(-0.6)
P 		19.3
(-0.9)
A 		27.2
(3)
P 		19.8
(-0.6)
P 		12
B 28.4
(-0.7)
P 		38.3
(0.9)
A 		22.9
(-1.6)
A 		14.4
(-3)
P 		51.3
(3)
P 		39.4
(1.1)
P 		37
C 43.6
(3)
P 		27.3
(-1.5)
P 		28.6
(-1.1)
P 		21.7
(-3)
P 		23.5
(-2.5)
A 		30.9
(-0.5)
P 		22
avr 29.9
(1.4) 		26.8
(0.2) 		23.8
(-0.9) 		18.5
(-3) 		34
(3) 		30
(1.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16245
Sequence Type Exemplar sequence
Representative Public ID F17A2.13 NCBI
Target Description F17A2.13 /REP_DB=WormBase Gene ID /WP=CE03222 /TR=Q19510 /GB=CAA92157.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077660(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077660 NCBI Caenorhabditis elegans F17A2.13 (F17A2.13) mRNA, complete cds. 9/11 None
SNAP00000014131 ENSEMBL cdna:SNAP chromosome:CEL140:X:12321587:12322699:1 9/11 None
GENEFINDER00000014134 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12321587:12322786:1 9/11 None
F17A2.13 ENSEMBL cdna:known chromosome:CEL140:X:12321587:12322699:1 gene:F17A2.13 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12321586-12322699(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17A2.13
Entrez Gene 181390 Entrez gene
SwissProt Q19510 EMBL-EBI
WormBase CE33999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92157 Hypothetical protein F17A2.13 [Caenorhabditis elegans] ref|NP_510061.2| F17A2.13 [Caenorhabditis elegans] 1.0E-147
blast CAA92157 Hypothetical protein F17A2.13 [Caenorhabditis elegans] ref|NP_510061.2| F17A2.13 [Caenorhabditis elegans] 1.0E-146
blast CAE58221 Hypothetical protein CBG01317 [Caenorhabditis briggsae] 4.0E-19
blast CAE58221 Hypothetical protein CBG01317 [Caenorhabditis briggsae] 5.0E-19
blast CAE61423 Hypothetical protein CBG05291 [Caenorhabditis briggsae] 4.0E-16
Sequence
Target Sequence 
>C. ELEGANS:182335_AT
agatgtgtgcgatggtcctgtgttcaggaaggagtcttttctgaaacagagccaaaatga
agaagaagaagaaaaggcagatgttcaagaaaattttgacgagcaggagaatgctaaaaa
tgaaaacgacgaggtgttctatgaaaacgagaacgaagcaaaggaactagtcgagacccc
cattctccgatctttgtcccgccaattttctggcctaacgattatcaagtctcacatcaa
aaaagacaatctcgatgtggagagtagatctccagctcgtccactccgatcaattgcggc
atcggtttcacagatgcgcttggacacattgaattcgatcattgcaccacacgatgaacg
cgtaaatgttctcaagacaatctatgaaaattgcaagaagggagtaaacaaagaaatgga
tgcactgtgctgtgctctttttgatcttcttgatgatgtcgatgagaagtcattatcgat
tcacgaggaatacgttgctgccaagtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGTGTGCGATGGTCCTGTGTTC 547 67 231 Antisense
CAAAGGAACTAGTCGAGACCCCCAT 454 179 389 Antisense
TCCCGCCAATTTTCTGGCCTAACGA 602 595 427 Antisense
GGCCTAACGATTATCAAGTCTCACA 204 543 442 Antisense
GGAGAGTAGATCTCCAGCTCGTCCA 110 519 489 Antisense
GTCCACTCCGATCAATTGCGGCATC 651 477 509 Antisense
TCAATTGCGGCATCGGTTTCACAGA 211 633 520 Antisense
GGTTTCACAGATGCGCTTGGACACA 92 507 534 Antisense
GAATTCGATCATTGCACCACACGAT 223 325 561 Antisense
GGATGCACTGTGCTGTGCTCTTTTT 181 513 648 Antisense
CGAGGAATACGTTGCTGCCAAGTAC 70 249 714 Antisense
Sequence Source Affymetrix Proprietary Database