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[182334_at]

Description R05G6.1 /REP_DB=WormBase Gene ID /WP=CE07414 /TR=Q21760 /GB=AAB00630.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      6grp_total > 15      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 142.2
(3)
P 		44.3
(-3)
A 		53.1
(-2.5)
A 		70.2
(-1.4)
M 		98
B 177.8
(3)
P 		62.1
(-2.2)
P 		44.8
(-3)
A 		70.9
(-1.8)
P 		133
C 151.7
(3)
P 		76.2
(-1.1)
M 		42.4
(-3)
A 		68.4
(-1.6)
P 		109
avr 157.2
(3) 		60.9
(-2.2) 		46.8
(-3) 		69.8
(-1.8) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 111.9
(3)
P 		68.3
(-0.6)
P 		84.6
(0.8)
P 		43.3
(-2.6)
A 		77.5
(0.2)
P 		39
(-3)
A 		73
B 114
(3)
P 		108.7
(2.6)
P 		64.5
(-0.6)
P 		30.5
(-3)
P 		74.5
(0.2)
P 		47.8
(-1.8)
P 		84
C 85.3
(1.1)
P 		113.6
(3)
P 		43.1
(-1.8)
A 		58.5
(-0.7)
A 		24.9
(-3)
A 		53.6
(-1.1)
P 		89
avr 103.7
(3) 		96.9
(2.3) 		64.1
(-1) 		44.1
(-3) 		59
(-1.5) 		46.8
(-2.7) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 51.8
(3)
P 		9.6
(-3)
A 		13.9
(-2.4)
A 		10.3
(-2.9)
M 		42
B 56.7
(3)
P 		15.3
(-2.4)
P 		10.4
(-3)
A 		15.1
(-2.4)
P 		46
C 50.2
(3)
P 		21.9
(-1.4)
M 		14.8
(-2.5)
A 		11.5
(-3)
P 		39
avr 52.9
(3) 		15.6
(-2.5) 		13
(-2.9) 		12.3
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 20.6
(1.5)
P 		24.3
(3)
P 		18.4
(0.6)
P 		11
(-2.4)
A 		23.4
(2.6)
P 		9.5
(-3)
A 		15
B 39.7
(3)
P 		36.2
(2.3)
P 		15.7
(-1.6)
P 		8.1
(-3)
P 		30.3
(1.2)
P 		17.8
(-1.2)
P 		32
C 31.6
(2.3)
P 		34.7
(3)
P 		11
(-2.3)
A 		11.8
(-2.2)
A 		8.1
(-3)
A 		17.9
(-0.8)
P 		27
avr 30.6
(2.7) 		31.7
(3) 		15
(-1.7) 		10.3
(-3) 		20.6
(-0.1) 		15.1
(-1.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10352
Sequence Type Exemplar sequence
Representative Public ID R05G6.1 NCBI
Target Description R05G6.1 /REP_DB=WormBase Gene ID /WP=CE07414 /TR=Q21760 /GB=AAB00630.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068818 NCBI Caenorhabditis elegans R05G6.1 (R05G6.1) mRNA, complete cds. 11/11 None
SNAP00000020444 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7539171:7541880:1 11/11 None
GENEFINDER00000020451 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7537362:7541880:1 11/11 None
R05G6.1 ENSEMBL cdna:known chromosome:CEL140:IV:7537960:7541880:1 gene:R05G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7537965-7541886(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05G6.1
Entrez Gene 187619 Entrez gene
SwissProt Q21760 EMBL-EBI
WormBase CE07414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501219 R05G6.1 [Caenorhabditis elegans] gb|AAB00630.1| Hypothetical protein R05G6.1 [Caenorhabditis elegans] 1.0E-154
blast NP_501219 R05G6.1 [Caenorhabditis elegans] gb|AAB00630.1| Hypothetical protein R05G6.1 [Caenorhabditis elegans] 1.0E-137
blast CAE61908 Hypothetical protein CBG05904 [Caenorhabditis briggsae] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:182334_AT
gatgtggcacagctacaaggagcaattgaacactatgtgcttcgaaactctgcacagttt
gatcctgtcgaattggatattatcaacaaagaaggttacagaatcatgcaagcaagtgtc
tatccagatgagataattcttcaagaaggcagtaaaaaaatctgtgaaattacgttaatc
gacactgaagacacaagtagcatgcttaaaatcaagcatccggtttctggaatgacagtc
tatgaacttcgtgaactcggtggaaccattctcattcaaacaaacactgatgaattgaaa
ggggctcgagttatgacacagacatctggattgagcagtttatttttaaactgtggttgt
gcatttagcaaagaaacgtggtcagtgctgacacaagacaagattatggcaaatgttcga
ccgaatcgttcattttggtcagagaatgagattaagattcaatgggatccgaactgtgaa
aacgaacttcgtctaatctctctcgtatttggaattggacaaatggttagagtggctttt
cctcaattattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGGCACAGCTACAAGGAGCAA 183 409 370 Antisense
AACACTATGTGCTTCGAAACTCTGC 597 135 398 Antisense
AACTCTGCACAGTTTGATCCTGTCG 430 141 415 Antisense
CATGCAAGCAAGTGTCTATCCAGAT 25 211 474 Antisense
TTAAAATCAAGCATCCGGTTTCTGG 571 679 575 Antisense
GTGAACTCGGTGGAACCATTCTCAT 51 483 620 Antisense
AGGGGCTCGAGTTATGACACAGACA 247 59 669 Antisense
GTTCGACCGAATCGTTCATTTTGGT 8 443 784 Antisense
AACGAACTTCGTCTAATCTCTCTCG 701 143 850 Antisense
ATCTCTCTCGTATTTGGAATTGGAC 582 29 865 Antisense
GAGTGGCTTTTCCTCAATTATTCCA 641 401 899 Antisense
Sequence Source Affymetrix Proprietary Database