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[182333_at]

Description C54G7.1 /REP_DB=WormBase Gene ID /WP=CE04269 /TR=Q18858 /GB=AAA81393.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 44.6
(3)
A 		35.6
(0.2)
A 		32.5
(-0.7)
A 		25.2
(-3)
A 		19
B 19.6
(0)
A 		6.5
(-3)
A 		19.7
(0)
A 		32.6
(3)
A 		26
C 71.4
(2.6)
A 		36.9
(-1.8)
A 		27.9
(-3)
A 		74.8
(3)
A 		47
avr 45.2
(3) 		26.3
(-3) 		26.7
(-2.9) 		44.2
(2.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 13.7
(-2.2)
A 		2.6
(-3)
A 		84
(3)
A 		23.2
(-1.5)
A 		28.9
(-1.1)
A 		11.2
(-2.4)
A 		81
B 25.1
(-0.7)
A 		51.3
(3)
A 		21.5
(-1.2)
A 		9.2
(-3)
A 		39.9
(1.4)
A 		36
(0.8)
A 		42
C 34.4
(0.3)
A 		59.5
(3)
A 		27.7
(-0.5)
A 		4.5
(-3)
A 		25
(-0.8)
A 		4.8
(-3)
A 		55
avr 24.4
(-0.7) 		37.8
(1.8) 		44.4
(3) 		12.3
(-3) 		31.3
(0.6) 		17.3
(-2.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16.3
(3)
A 		7.7
(-1.1)
A 		8.5
(-0.7)
A 		3.7
(-3)
A 		13
B 6.2
(2.1)
A 		1.6
(-3)
A 		4.6
(0.3)
A 		7
(3)
A 		5
C 23.6
(3)
A 		10.6
(-2.6)
A 		9.7
(-3)
A 		12.6
(-1.7)
A 		14
avr 15.4
(3) 		6.6
(-3) 		7.6
(-2.3) 		7.8
(-2.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.5
(-2.4)
A 		0.9
(-3)
A 		18.3
(3)
A 		5.9
(-1.3)
A 		8.7
(-0.3)
A 		2.7
(-2.4)
A 		17
B 8.7
(-0.4)
A 		17.1
(3)
A 		5.2
(-1.9)
A 		2.4
(-3)
A 		16.2
(2.6)
A 		13.4
(1.5)
A 		15
C 12.8
(1.2)
A 		18.1
(3)
A 		7.1
(-0.8)
A 		0.9
(-3)
A 		8.1
(-0.5)
A 		1.6
(-2.8)
A 		17
avr 8
(0.3) 		12
(3) 		10.2
(1.8) 		3.1
(-3) 		11
(2.3) 		5.9
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16243
Sequence Type Exemplar sequence
Representative Public ID C54G7.1 NCBI
Target Description C54G7.1 /REP_DB=WormBase Gene ID /WP=CE04269 /TR=Q18858 /GB=AAA81393.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076538 NCBI Caenorhabditis elegans C54G7.1 (C54G7.1) mRNA, complete cds. 11/11 None
SNAP00000026247 ENSEMBL cdna:SNAP chromosome:CEL140:X:5543914:5545489:1 11/11 None
GENEFINDER00000026251 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5543914:5545489:1 11/11 None
C54G7.1 ENSEMBL cdna:known chromosome:CEL140:X:5543914:5545489:1 gene:C54G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5543913-5545489(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54G7.1
Entrez Gene 183816 Entrez gene
SwissProt Q18858 EMBL-EBI
WormBase CE04269 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81393 Hypothetical protein C54G7.1 [Caenorhabditis elegans] ref|NP_508939.1| C54G7.1 [Caenorhabditis elegans] 1.0E-153
blast CAE68841 Hypothetical protein CBG14803 [Caenorhabditis briggsae] 1.0E-102
blast CAE59615 Hypothetical protein CBG03024 [Caenorhabditis briggsae] 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:182333_AT
ggcgctcagattgaatcgggcgtgcaggagaaatgacgagtatcacagttgtttgcagag
atgcccaaatgtgcccgctaaagagatactaatcaaaggacaaaacgtttggatgatttt
atgccacgattttagaaatgatacagatttccgtgtcaatatagtcccgtgttggtccga
ctatggtcaccaaatttctgaacgatgtgaatcactagccacgtttctacaggcggaagt
aatgcaacttcttcaaggtggtcccacaggaatacaggagtcactggaaagtttgtgcaa
aagcgtttatgagtacgacaaatgctttgtcaatgagaactatgacttttgtgggtcttc
ggcggctaggtttcttgtcaaactaaatcatcaaacatcacacacaattttggagctgct
cgatcaaacaaatacaatcggaaaattgccaaggagttgtaaggactggctcaatcaaaa
aggaatgacaggatggcaaaaaacaaaaaccattcaaagaaaattacgaaattcggctca
actccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCTCAGATTGAATCGGGCGTGC 658 541 201 Antisense
TGCCCAAATGTGCCCGCTAAAGAGA 468 583 262 Antisense
TTTCCGTGTCAATATAGTCCCGTGT 171 669 348 Antisense
TCCCGTGTTGGTCCGACTATGGTCA 126 597 365 Antisense
GTGAATCACTAGCCACGTTTCTACA 358 481 407 Antisense
TGCAACTTCTTCAAGGTGGTCCCAC 162 577 443 Antisense
TATGACTTTTGTGGGTCTTCGGCGG 589 653 541 Antisense
GGCGGCTAGGTTTCTTGTCAAACTA 287 541 561 Antisense
CACACACAATTTTGGAGCTGCTCGA 514 193 599 Antisense
GGAGTTGTAAGGACTGGCTCAATCA 417 517 653 Antisense
ATTACGAAATTCGGCTCAACTCCCT 287 13 723 Antisense
Sequence Source Affymetrix Proprietary Database