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[182332_at]

Description M03A8.2 /REP_DB=WormBase Gene ID /WP=CE04771 /TR=Q21480 /GB=AAA83183.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 838
1 2 3 4 range
A 599.9
(-0.8)
P 		420.2
(-2.3)
P 		344.2
(-3)
P 		1027.1
(3)
P 		683
B 517.7
(-1.6)
P 		315.1
(-3)
P 		415.2
(-2.3)
P 		1153.5
(3)
P 		838
C 513.2
(-2.1)
P 		442.8
(-2.9)
P 		432
(-3)
P 		959.8
(3)
P 		528
avr 543.6
(-1.6) 		392.7
(-3) 		397.1
(-3) 		1046.8
(3) 		654

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 809
1 2 3 4 5 6 range
A 487.3
(-1)
P 		655.2
(0.8)
P 		294.7
(-3)
P 		499.4
(-0.8)
P 		660.1
(0.9)
P 		862.2
(3)
P 		568
B 539.8
(0.7)
P 		578.2
(1.9)
P 		426.3
(-3)
P 		491.5
(-0.9)
P 		506.3
(-0.4)
P 		611
(3)
P 		185
C 1103.7
(3)
P 		516.3
(-2.1)
P 		413.1
(-3)
P 		667.1
(-0.8)
P 		611.1
(-1.3)
P 		639.2
(-1)
P 		691
avr 710.3
(3) 		583.2
(0.7) 		378
(-3) 		552.7
(0.2) 		592.5
(0.9) 		704.1
(2.9) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 218.4
(3)
P 		91.2
(-2.9)
P 		90
(-3)
P 		150.3
(-0.2)
P 		128
B 165.1
(0.1)
P 		77.8
(-3)
P 		96.2
(-2.3)
P 		245.8
(3)
P 		168
C 169.9
(3)
P 		127.3
(-3)
P 		150.6
(0.3)
P 		161.8
(1.9)
P 		43
avr 184.5
(2.9) 		98.8
(-3) 		112.3
(-2.1) 		186
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 89.8
(-2.1)
P 		233
(3)
P 		64.2
(-3)
P 		126.7
(-0.8)
P 		199.2
(1.8)
P 		209.9
(2.2)
P 		169
B 187.8
(1.1)
P 		192.4
(1.3)
P 		103.5
(-3)
P 		130.2
(-1.7)
P 		205.7
(1.9)
P 		227.8
(3)
P 		124
C 409.1
(3)
P 		157.5
(-2)
P 		105.1
(-3)
P 		134.2
(-2.4)
P 		197.7
(-1.2)
P 		214
(-0.9)
P 		304
avr 228.9
(3) 		194.3
(1.5) 		90.9
(-3) 		130.4
(-1.3) 		200.9
(1.8) 		217.2
(2.5) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16235
Sequence Type Exemplar sequence
Representative Public ID M03A8.2 NCBI
Target Description M03A8.2 /REP_DB=WormBase Gene ID /WP=CE04771 /TR=Q21480 /GB=AAA83183.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076744(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076744 NCBI Caenorhabditis elegans M03A8.2 (M03A8.2) mRNA, complete cds. 10/11 None
SNAP00000010628 ENSEMBL cdna:SNAP chromosome:CEL140:X:6809057:6816650:1 9/11 None
GENEFINDER00000010634 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6809057:6816650:1 9/11 None
M03A8.2 ENSEMBL cdna:known chromosome:CEL140:X:6809057:6817152:1 gene:M03A8.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6809056-6816858(+) 98.58 100.0
Public Domain and Genome References
Gene Title
Ensembl M03A8.2
Entrez Gene 180949 Entrez gene
SwissProt Q21480 EMBL-EBI
WormBase CE30679 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601197_AT similar to CG1241-PA cfa
CANINE_2:CFA.7748.1.A1_AT similar to CG1241-PA cfa
CANINE_2:CFAAFFX.21780.1.S1_S_AT similar to CG1241-PA cfa
CANINE_2:CFAAFFX.21787.1.S1_S_AT similar to CG1241-PA cfa
U133_X3P:HS.105850.0.S1_3P_AT KIAA0404 protein hs
HG-U133A_2:213300_AT KIAA0404 protein hs
HG-U133_PLUS_2:213300_AT KIAA0404 protein hs
HG-U133A:213300_AT KIAA0404 protein hs
HG-U95AV2:37146_AT KIAA0404 protein hs
HG-U95D:69156_AT KIAA0404 protein hs
MU11KSUBA:C76031_RC_S_AT cDNA sequence BC023754 mm
MG-U74AV2:103988_AT cDNA sequence BC023754 mm
MOE430A:1426843_AT cDNA sequence BC023754 mm
MOUSE430A_2:1426843_AT cDNA sequence BC023754 mm
MOUSE430_2:1426843_AT cDNA sequence BC023754 mm
RG-U34B:RC_AA998979_AT EH-domain containing 1 (predicted) rn
RG-U34C:RC_AI177867_AT EH-domain containing 1 (predicted) rn
RAE230A:1372317_AT EH-domain containing 1 (predicted) rn
RAT230_2:1372317_AT EH-domain containing 1 (predicted) rn
RAE230B:1377665_AT EH-domain containing 1 (predicted) rn
RAT230_2:1377665_AT EH-domain containing 1 (predicted) rn
RAE230A:1388623_AT EH-domain containing 1 (predicted) rn
RAT230_2:1388623_AT EH-domain containing 1 (predicted) rn
RG-U34B:RC_AI045370_AT EH-domain containing 1 (predicted) rn
RG-U34B:RC_AI059096_AT EH-domain containing 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA83183 Hypothetical protein M03A8.2 [Caenorhabditis elegans] ref|NP_509145.2| M03A8.2 [Caenorhabditis elegans] 0.0
blast CAE65793 Hypothetical protein CBG10898 [Caenorhabditis briggsae] 0.0
blast XP_792926 PREDICTED: similar to CG1241-PA [Strongylocentrotus purpuratus] 9.0E-51
Sequence
Target Sequence 
>C. ELEGANS:182332_AT
tgggcaccggacgttgtatgcagcatccatcggcgagtgctggtatagtaggtatggcgc
agacagtcactggatttgtgcaaagtctcgccgagatgacgatgaaggaaataaaaccag
acgacccgtcaacaaggagagttgcgagacgatacaacagaaatcacggtatgaacccga
cagatgtccgccatagtctgcaactcgcttacggaattctttatgatgggtatcatcaga
cgagagatgatctggaactcgctgctcaggaagaccgggcttcaggaaattccgtcgtca
gaagtgcgttccgttacgctgttccaacgttcctgggacctattgttatggctactcaag
tcacgtaccaactactgggaggacttcgcaaccaactacgtcctgatacttatcaagacg
aacgtcgaaaatggggtgaaaaagatgtacccggagcatttcattttttttcttttttcc
tccatttttggttattttttcttttctttttttgtacatttgtattttcccaactgcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCACCGGACGTTGTATGCAGCA 124 555 6182 Antisense
GCATCCATCGGCGAGTGCTGGTATA 510 309 6204 Antisense
GATTTGTGCAAAGTCTCGCCGAGAT 595 427 6254 Antisense
GACAGATGTCCGCCATAGTCTGCAA 462 369 6360 Antisense
GTCTGCAACTCGCTTACGGAATTCT 412 471 6377 Antisense
TGATCTGGAACTCGCTGCTCAGGAA 3 567 6429 Antisense
AATTCCGTCGTCAGAAGTGCGTTCC 545 171 6469 Antisense
TTCCAACGTTCCTGGGACCTATTGT 565 1 6503 Antisense
ATGGCTACTCAAGTCACGTACCAAC 320 51 6529 Antisense
AACCAACTACGTCCTGATACTTATC 579 147 6571 Antisense
ACATTTGTATTTTCCCAACTGCCTT 258 105 6697 Antisense
Sequence Source Affymetrix Proprietary Database