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[182330_s_at]

Description Y37A1A.2 /REP_DB=WormBase Gene ID /WP=CE16613 /TR=O45919 /GB=CAB16469.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2585
1 2 3 4 range
A 131.7
(-3)
P 		174.8
(-2.9)
P 		365
(-2.4)
P 		2619
(3)
P 		2487
B 170.8
(-3)
P 		255.9
(-2.8)
P 		275.2
(-2.8)
P 		2717
(3)
P 		2546
C 143.2
(-3)
P 		251.8
(-2.7)
P 		340.7
(-2.5)
P 		2609.4
(3)
P 		2466
avr 148.6
(-3) 		227.5
(-2.8) 		327
(-2.6) 		2648.5
(3) 		2500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1000
1 2 3 4 5 6 range
A 156.3
(-3)
P 		388.9
(-1.5)
P 		1031.6
(2.5)
P 		794.7
(1)
P 		1104.4
(3)
P 		885.5
(1.6)
P 		948
B 172.9
(-3)
P 		533.1
(-0.6)
P 		990.2
(2.5)
P 		1018.7
(2.7)
P 		882.2
(1.8)
P 		1065.2
(3)
P 		892
C 130.3
(-3)
P 		606.5
(-0.1)
P 		815.1
(1.1)
P 		845.8
(1.3)
P 		806.5
(1.1)
P 		1130.7
(3)
P 		1000
avr 153.2
(-3) 		509.5
(-0.6) 		945.6
(2.4) 		886.4
(2) 		931
(2.3) 		1027.1
(3) 		874
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 47.9
(-2.8)
P 		37.9
(-3)
P 		95.4
(-2)
P 		383.4
(3)
P 		346
B 54.5
(-3)
P 		63.2
(-2.9)
P 		63.8
(-2.9)
P 		579
(3)
P 		525
C 47.4
(-3)
P 		72.4
(-2.6)
P 		118.7
(-1.9)
P 		440
(3)
P 		393
avr 49.9
(-3) 		57.8
(-2.9) 		92.6
(-2.4) 		467.5
(3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 28.8
(-3)
P 		138.3
(-0.8)
P 		224.7
(0.9)
P 		201.6
(0.4)
P 		333.3
(3)
P 		215.6
(0.7)
P 		305
B 60.2
(-3)
P 		177.5
(-0.9)
P 		240.5
(0.2)
P 		269.8
(0.7)
P 		358.4
(2.3)
P 		397.2
(3)
P 		337
C 48.3
(-3)
P 		185
(-0.5)
P 		207.5
(-0.1)
P 		170.1
(-0.8)
P 		261
(0.9)
P 		378.5
(3)
P 		330
avr 45.8
(-3) 		166.9
(-0.4) 		224.2
(0.8) 		213.8
(0.5) 		317.6
(2.7) 		330.4
(3) 		285
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182330_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9749
Sequence Type Exemplar sequence
Representative Public ID Y37A1A.2 NCBI
Target Description Y37A1A.2 /REP_DB=WormBase Gene ID /WP=CE16613 /TR=O45919 /GB=CAB16469.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070275(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070275 NCBI Caenorhabditis elegans Y37A1A.2 (Y37A1A.2) mRNA, complete cds. 10/11 None
GENEFINDER00000035970 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13906083:13912259:-1 11/11 None
Y37A1A.2 ENSEMBL cdna:known chromosome:CEL140:IV:13905988:13912349:-1 gene:Y37A1A.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035963 6/11 Cross Hyb Matching Probes None
SNAP00000035964 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13906088-13912355(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37A1A.2
Entrez Gene 178355 Entrez gene
SwissProt O45919 EMBL-EBI
WormBase CE37424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16469 Hypothetical protein Y37A1A.2 [Caenorhabditis elegans] ref|NP_502676.2| Y37A1A.2 [Caenorhabditis elegans] 0.0
blast CAE74654 Hypothetical protein CBG22453 [Caenorhabditis briggsae] 0.0
blast CAA21581 Hypothetical protein Y11D7A.3 [Caenorhabditis elegans] ref|NP_501608.1| Y11D7A.3 [Caenorhabditis elegans] 9.0E-94
blast CAA21581 Hypothetical protein Y11D7A.3 [Caenorhabditis elegans] ref|NP_501608.1| Y11D7A.3 [Caenorhabditis elegans] 9.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 5.1E-55
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 5.1E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502676.2 12 5-27,42-59,85-107,117-139,178-200,215-237,269-291,306-327,339-361,376-398,419-441,445-464
Y37A1A.2 12 5-27,42-59,85-107,117-139,178-200,215-237,269-291,306-327,339-361,376-398,419-441,445-464
GENEFINDER00000035970 12 12-34,54-73,80-102,107-126,147-169,184-206,239-261,276-293,322-344,359-381,402-424,428-447
Sequence
Target Sequence 
>C. ELEGANS:182330_S_AT
agtccttttctcatttgaacacttctcttctaatcttcacatatgtttacatgggatgta
tggtatcattcatgtacggtatctacccaacttcattgtcttttacatctgaaactgcat
ctgatgtctacattattgcactgtaccttctgtcgtctggattggccgcttttttgagtg
accgttatctctcgatgatcatcggattccttctcggattcgctgacttcacgattacca
tgacaagatctgtcatctgccagattgctgttccagactttcgagctgaaattttcagtc
tcacgagaatttatcagtgcgtggcatcttgtgtaattctattcatctctccatatctga
cagttaccacttggataatcattctaattgtcggacttttaatcggaattgctgcaatgt
ttgcagttttatgtcggacacacaacaatacaatcgctgcacccattgagccattggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCTTTTCTCATTTGAACACTTC 377 59 902 Antisense
ACTTCTCTTCTAATCTTCACATATG 664 103 922 Antisense
GTATCTACCCAACTTCATTGTCTTT 153 455 980 Antisense
ACATTATTGCACTGTACCTTCTGTC 586 105 1031 Antisense
TCTGGATTGGCCGCTTTTTTGAGTG 298 555 1057 Antisense
GATGATCATCGGATTCCTTCTCGGA 247 411 1095 Antisense
GATTGCTGTTCCAGACTTTCGAGCT 338 431 1164 Antisense
CAGTGCGTGGCATCTTGTGTAATTC 705 207 1216 Antisense
TGTGTAATTCTATTCATCTCTCCAT 482 555 1231 Antisense
CATCTCTCCATATCTGACAGTTACC 132 213 1245 Antisense
GCTGCACCCATTGAGCCATTGGAAG 400 297 1357 Antisense
Sequence Source Affymetrix Proprietary Database