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[182329_at]

Description T15B7.7 /REP_DB=WormBase Gene ID /WP=CE13660 /TR=O17032 /GB=AAB69963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 47.7
(3)
A 		5.2
(-3)
A 		16.1
(-1.5)
A 		40
(1.9)
A 		43
B 3.5
(-3)
A 		8.7
(-2)
A 		4.4
(-2.8)
A 		34.7
(3)
A 		31
C 36
(-0.2)
A 		6.5
(-2.9)
A 		5.9
(-3)
A 		69.3
(3)
P 		63
avr 29.1
(0.2) 		6.8
(-3) 		8.8
(-2.7) 		48
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 2.3
(-3)
A 		7.1
(-2.4)
A 		51.7
(3)
A 		5.7
(-2.6)
A 		24.5
(-0.3)
A 		18.6
(-1)
A 		49
B 5
(-2.5)
A 		18
(1)
A 		3.6
(-2.9)
A 		25.2
(3)
A 		3.3
(-3)
A 		18.3
(1.1)
A 		22
C 4.4
(-2.7)
A 		47.8
(3)
A 		1.9
(-3)
A 		2
(-3)
A 		10.6
(-1.9)
A 		35.1
(1.3)
A 		46
avr 3.9
(-3) 		24.3
(3) 		19.1
(1.5) 		11
(-0.9) 		12.8
(-0.4) 		24
(2.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.4
(3)
A 		1.1
(-3)
A 		4.2
(-1.9)
A 		5.9
(-1.2)
A 		16
B 1.1
(-2.9)
A 		2.2
(-1.9)
A 		1
(-3)
A 		7.4
(3)
A 		6
C 11.9
(3)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		11.7
(2.9)
P 		10
avr 10.1
(3) 		1.7
(-3) 		2.4
(-2.5) 		8.3
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.5
(-1.8)
A 		11.3
(3)
A 		1.4
(-2.4)
A 		7.4
(0.9)
A 		4.5
(-0.7)
A 		11
B 1.7
(-2.2)
A 		6
(2.2)
A 		0.9
(-3)
A 		6.7
(2.9)
A 		1.4
(-2.5)
A 		6.8
(3)
A 		6
C 1.6
(-2.5)
A 		14.6
(3)
A 		0.5
(-3)
A 		0.4
(-3)
A 		3.4
(-1.7)
A 		11.8
(1.8)
A 		14
avr 1.2
(-3) 		7.7
(3) 		4.2
(-0.2) 		2.8
(-1.5) 		4.1
(-0.3) 		7.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12105
Sequence Type Exemplar sequence
Representative Public ID T15B7.7 NCBI
Target Description T15B7.7 /REP_DB=WormBase Gene ID /WP=CE13660 /TR=O17032 /GB=AAB69963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072331 NCBI Caenorhabditis elegans T15B7.7 (T15B7.7) mRNA, complete cds. 11/11 None
SNAP00000035386 ENSEMBL cdna:SNAP chromosome:CEL140:V:6825867:6828561:1 11/11 None
GENEFINDER00000035396 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6823796:6829466:1 11/11 None
T15B7.7 ENSEMBL cdna:known chromosome:CEL140:V:6826624:6828561:1 gene:T15B7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035384 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035403 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6826624-6828562(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.7
Entrez Gene 188517 Entrez gene
SwissProt O17032 EMBL-EBI
WormBase CE13660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69963 Hypothetical protein T15B7.7 [Caenorhabditis elegans] ref|NP_504732.1| T15B7.7 [Caenorhabditis elegans] 0.0
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 0.0
blast AAF39844 Hypothetical protein F56A4.6 [Caenorhabditis elegans] ref|NP_503670.2| F56A4.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035396 2 29-51,815-837
Sequence
Target Sequence 
>C. ELEGANS:182329_AT
gatacagcgactttatcaaccatacttcgccatggtgattttctgtggtccatggtatcc
tgcacagttttccgatgacacaaatttcacatcaactatttctccaattaactatattca
tatgaatccagctgaaattgagaaaggattctatgcataccattgtgccacacttgtcca
agaattaggcatacaaaatgttgcagggtattttctgatgggagacgatactgtatttaa
tatttggcaacggatcgatttttcacgaatccatcatttaactggtgtttcatttgagaa
aagttctgagtggtggcagtatccagatataggaatgggagctgccaagaatgttgtgag
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACAGCGACTTTATCAACCATAC 596 423 879 Antisense
TACTTCGCCATGGTGATTTTCTGTG 397 645 901 Antisense
TTCTGTGGTCCATGGTATCCTGCAC 562 693 919 Antisense
TATCCTGCACAGTTTTCCGATGACA 565 657 934 Antisense
TTTCACATCAACTATTTCTCCAATT 441 673 963 Antisense
GATTCTATGCATACCATTGTGCCAC 6 433 1025 Antisense
CCATTGTGCCACACTTGTCCAAGAA 207 271 1038 Antisense
ATATTTGGCAACGGATCGATTTTTC 382 15 1118 Antisense
ATTTTTCACGAATCCATCATTTAAC 229 15 1136 Antisense
AGTTCTGAGTGGTGGCAGTATCCAG 185 63 1180 Antisense
GGGAGCTGCCAAGAATGTTGTGAGA 264 495 1215 Antisense
Sequence Source Affymetrix Proprietary Database